Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02623 ATGTTGGGTTACCCACTCCTTTTCTTCTTCTTCCTCTTCTTCCAAGCACCAGCTGTACTTCACCAACATCAACGTCGCAAATCATCTGAATTACCCAAACCCAAATCAAAACGCGTCTTCTTTTGCCCTTCCTTTCTTCCCCCTATATATACAACATTTCAACCCGAACCCACAACTCTCGCACAGCACACTAACATCATCATGTCTCCACTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTTCTCTCCTCTCCACACCTCTGCCTGCAACTCAACCACACCTCATTCTCACTCTCTTTTCCTCTCACCTCACTCCCTCTCTCCACCAACACCGCCTCCAAGATGCTGCGCGACTCTCTCACTGCCAACTCAAACCGCACCACAAATAACACGCGACTCACTTCGCCTTCTTCTCCATATAACTACAGGCTCACCTTCAAATACTCCATGGTTTTAATCGTCAACCTTCCCATTGGGACCCCACCGCAGGTTCAGCCTATGTTGTTGGACACCGGAAGCCAACTCTCGTGGATTCAGTGTCACCGAAAACCACCCAAGATGCCTCCCCCAACGGCCTCCTTTGACCCTTCTCTCTCCTCCACTTTCTCCATTCTTCCCTGTACTCACCCTGTTTGCAAACCACGAATTCCCGATTTTACTCTCCCCACTTCCTGCGACCAGAACCGCCTCTGTCACTACTCCTACTTCTACGCCGACGGTACCTACGCTGAGGGAAATCTCGTCAGAGAAAAATTCACTTTCTCCCGTTCCCTTTTTACCCCTCCTCTCATCCTCGGCTGCGCCACGGAGTCCACCGACCCCAGGGGCATTTTGGGAATGAACCGTGGACGCCTCTCCTTCGCTTCACAATCCAAACTTACCAAATTCTCCTATTGCGTCCCCACCCGAGAAACCCGACCCGGCTCCACTTCAACCGGGTCCTTCTACCTAGGCCACAACCCGAACTCTCTCCGGTTCAAGTTTATCCAAATGTTGACTTTTACTCAGAGTCAACGCATGCCAAATCTTGACCCCTTGGCTTATACTGTCGCCTTGCTGGGGATAAGAATCGGGGGCAGAAAATTGAATATCTCGCCGGCGGTTTTTCGTGCTGACGCTGGCGGGTCGGGTCAAACTATGATTGACTCCGGATCCGATTTTACTTACCTTGTTAATGAGGCTTATGATAAGGTGCGGGCGCAAGTAGTGAGGGCTGTGGGGCCCAGGATGAAGAAGGATTACGTGTACTCTGGCGTTGCGGACATGTGTTTCGATGGGAACGCGGTTGAGATCGGACGGCTGATAGGGGACATGGTGTTCGAGTTCGAGAAGGGCGTGGAAATAGTGATCCCCAAGGAGAGGGTTCTCGCTTCCGTGGAGGGTGGGGTCCACTGCGTCGGGATTGGCAACTCTGATAAATTGGGTGCGGCCAGTAACATCATTGGGAATTTCCATCAGCAGAATCTGTGGGTGGAGTTTGATCTCGCCAATCGCAGAGTGGGTTTCGGTGCGGCTGATTGTAGCAGATTGGCTCAATAG 1548 0.5123 MLGYPLLFFFFLFFQAPAVLHQHQRRKSSELPKPKSKRVFFCPSFLPPIYTTFQPEPTTLAQHTNIIMSPLFFFFFFFFFFFSLLSSPHLCLQLNHTSFSLSFPLTSLPLSTNTASKMLRDSLTANSNRTTNNTRLTSPSSPYNYRLTFKYSMVLIVNLPIGTPPQVQPMLLDTGSQLSWIQCHRKPPKMPPPTASFDPSLSSTFSILPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKLTKFSYCVPTRETRPGSTSTGSFYLGHNPNSLRFKFIQMLTFTQSQRMPNLDPLAYTVALLGIRIGGRKLNISPAVFRADAGGSGQTMIDSGSDFTYLVNEAYDKVRAQVVRAVGPRMKKDYVYSGVADMCFDGNAVEIGRLIGDMVFEFEKGVEIVIPKERVLASVEGGVHCVGIGNSDKLGAASNIIGNFHQQNLWVEFDLANRRVGFGAADCSRLAQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02623 515 PANTHER OS07G0603500 PROTEIN-RELATED 112 510 - -
Phco2g02623 515 FunFam Aspartyl protease family protein 134 317 - -
Phco2g02623 515 Gene3D Acid Proteases 324 514 IPR021109 -
Phco2g02623 515 Gene3D Acid Proteases 144 321 IPR021109 -
Phco2g02623 515 FunFam aspartic proteinase PCS1 321 514 - -
Phco2g02623 515 SUPERFAMILY Acid proteases 155 513 IPR021109 -
Phco2g02623 515 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 170 181 IPR001969 GO:0004190|GO:0006508
Phco2g02623 515 CDD pepsin_A_like_plant 156 510 IPR034161 -
Phco2g02623 515 ProSiteProfiles Peptidase family A1 domain profile. 155 506 IPR033121 -
Phco2g02623 515 Pfam Xylanase inhibitor C-terminal 350 506 IPR032799 -
Phco2g02623 515 Pfam Xylanase inhibitor N-terminal 156 311 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02623 Phco-Chr2 55929108 55931029 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02623 2 55929108 55931029 Phco2g02623 2 55929108 55931029 ECH
Phco2g02623 2 55929108 55931029 Phco3g00561 3 4454829 4456121 PCT