Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00251 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAGGGACGACCCTCCAAGACAGATCTAGCACGCCGCTCCGGTCAATCTCCGGCGGCCTCCCAGCCAGACCTCCGACGGAGCCGCCGGCGCCGGAATGTGCGCTACAACATCGACTACGACGACTACCTTGACGAGGAGGATGAGGACGAGGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCGTGGTGAAGCTCAACAACCATGAGGAGGAGGACGATGACGAGGAGGACGACGCGCCGAGTCATGCGAGGGCGCGTGGCGTGCACGCGCAGGAGGAAAAGGGGGAGGAGGATGAGGAAGAGGGAGAGGAGGATGAGGAAGAGGAGGAGGAAGGGAATGAGGAGGCGGAGGAGCAGGAAGAAGAGCGTGAGGCAAAGGGCAGAAAAGTGGATTCTAAAGGGCTCCACTCAGCTTCAGTTTTAGGAACTCCGTCGAAGCTTCCACCTGGGATTTCACCTGGGATTCCGTTGCCTGACAAGAGGACCCTGGAGTTGATCCTTGACAAGCTTCAAAAGAAGGACACATATGGTGTGTATGCGGAGCCGGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTAATTGAGCATCCAATGGACTTTGCCACAGTGAGGAAGAAGTTGGCAAATGGATCCTATCCTACCTTTGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCGAATGCAATGCAATACAACGCAGCGGAGACTATATACCACAAACAGGCAAGATCGATACAAGAATTGGCAAGGAAAAAGTTTGAAAAGTTACGGTTTGACTTGGATCGCTCTCAGAGTGAGCTGAAGTCTGAACAGAAAACTAGATCTAATTCCCTGGTTAAGAAGCCAGCAAAGAAGCCACTTGGTCATACATCACAGGAACCTGTTGGCTCTGATTTTTCCTCCGGTGCAACTCTTGCTACTATTGGAGATGTATTGCCAACATCCCATCCAATGCAAGGCGTCCTTTGTGAAAGGCCTGGTAATATTGATGGCCTTGTGGAAGGGAATGCTTTCATGATTGATGCAAATCAAGAGAAAGCAGAAGACTACATATCAGGGAGGGGTCTGCTCTCCAAGTTGGGAAGGAAACCATCTATGCAAGATATGGAACGTCGTTCAACTTATAATATGCCTAATCCACCAGTTACTAGATCGGATTCTGTATTTACGACATTTGAGGGTGAAGTGAAGCAGCTAGTTACTGTTGGACTTCAAGCTGAACACTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACAGCTTGGAGAATCGCTTCCCAGAGAATTCAGCATGCACTCCCACCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAGTATGAACCACTTCCAACACCGGTATTAAAGCTTGATAATCTTGCCCAGCAACAACCTAGTTTGGGGACTAAGTTGCAGTCTACTACTGCTGAATTAATAAAGGTTGACAAAAATTGTAAGAATGTGGAATCCACCATGTTACATCCTGTTAATGGACCAATCCATGAGAGAAAACAGCCTTCAGTATGTTCTAGTAGTGGGCTTACATCAGATGGCAAATCATCGTTGTTTGGTTCTGCTGGAGCAAGACCCAACTCTCATGACAATATCTTTTATCAGCAGCCCAATGTCCAAACTAGGAACCTCAACAAGTCTGAGAACAAGGGTTTGAAACAAGTGGAATTAAACTCTTTGCCCTCCAGTGATCATAAAAATGCCAGTCTAGTTGCAAAGCTTACAAGTAATACTCCTGCAGCAGCGTCTAAGCCCAGAGAAATGATACCTAGTAACTTGACTATTTTACCTTCTATGCCTTTCAAGCAGCCAGACACTAACACTAACGGAGTTGTTAATGGAGAGTTACCCAATGGAAAAGTAAGGGGTACTAGCTTAAACAGACGGATGCCTGGTGCATCATCCGAAAGTACATCAAATCAACCAGGCAGATCAGCTCCCTTTGTTACCCATGGGCAGGAGCAGACTCTTAGTGACCCAGTTCAGTTGATGAGGATGTTAGCCGAAAAGACACAAAAGCAACAGACTTCTAGTTCATCCAATCATTCCCCTGCTGACACCCCACCAGTGACACCATCAGTTCCATCAGGACGGAGAGAGGATTCAAGCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTTGGTGCAGCAGGTTTTAAGCAAGGACCTGAAATTTCTACTTCACCCAAAAATCAGATTTCTGCAGATTCATTGTACAACCCAGCGCGAGAGTTCCATCAGCCCTACTCACGAATTAGGGGAGAGTTTTCTCCTGGTGGAACTCCTTTCCAGTCTGAGAAGAACAATTTTCCATTTCAGGCACTTGTACCCCAATCTCAACCTATTCAACCAGTTGGTGCTTCACCGTTTCCAAACAGACCTATGGTTTTCCCTCAAGTAGCAGCTTCTGACCTGTCAAGATTTCAGATACCACCTTGGCGGGGTATCCGACCTCACAGTCAACCAAGACAGAAACAGGAAACACTTCCTCCTGACCTGAACATTGGTTTCCAACCTCCTGGGTCACCTGCGAAACAATCATCTGGTGTGCTGGTTGACTCTCAGCAACCAGACCTTGCTTTGCAACTGTGA 2667 0.4769 MMGQIVRRKKKGRPSKTDLARRSGQSPAASQPDLRRSRRRRNVRYNIDYDDYLDEEDEDEEEDERRREKKKLKLVVKLNNHEEEDDDEEDDAPSHARARGVHAQEEKGEEDEEEGEEDEEEEEEGNEEAEEQEEEREAKGRKVDSKGLHSASVLGTPSKLPPGISPGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPTFEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRFDLDRSQSELKSEQKTRSNSLVKKPAKKPLGHTSQEPVGSDFSSGATLATIGDVLPTSHPMQGVLCERPGNIDGLVEGNAFMIDANQEKAEDYISGRGLLSKLGRKPSMQDMERRSTYNMPNPPVTRSDSVFTTFEGEVKQLVTVGLQAEHSYARSLARFAATLGPTAWRIASQRIQHALPPGCKFGRGWVGEYEPLPTPVLKLDNLAQQQPSLGTKLQSTTAELIKVDKNCKNVESTMLHPVNGPIHERKQPSVCSSSGLTSDGKSSLFGSAGARPNSHDNIFYQQPNVQTRNLNKSENKGLKQVELNSLPSSDHKNASLVAKLTSNTPAAASKPREMIPSNLTILPSMPFKQPDTNTNGVVNGELPNGKVRGTSLNRRMPGASSESTSNQPGRSAPFVTHGQEQTLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTPSVPSGRREDSSNASAAAARAWMSVGAAGFKQGPEISTSPKNQISADSLYNPAREFHQPYSRIRGEFSPGGTPFQSEKNNFPFQALVPQSQPIQPVGASPFPNRPMVFPQVAASDLSRFQIPPWRGIRPHSQPRQKQETLPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00251 888 ProSitePatterns Bromodomain signature. 190 246 IPR018359 -
Phco3g00251 888 MobiDBLite consensus disorder prediction 692 732 - -
Phco3g00251 888 Coils Coil 53 73 - -
Phco3g00251 888 ProSiteProfiles Bromodomain profile. 184 254 IPR001487 GO:0005515
Phco3g00251 888 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 887 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 515 534 - -
Phco3g00251 888 Pfam Bromodomain 178 258 IPR001487 GO:0005515
Phco3g00251 888 SMART bromo_6 165 273 IPR001487 GO:0005515
Phco3g00251 888 Gene3D - 101 292 IPR036427 GO:0005515
Phco3g00251 888 CDD Bromodomain 172 268 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 279 315 - -
Phco3g00251 888 PRINTS Bromodomain signature 235 254 IPR001487 GO:0005515
Phco3g00251 888 PRINTS Bromodomain signature 217 235 IPR001487 GO:0005515
Phco3g00251 888 PRINTS Bromodomain signature 201 217 IPR001487 GO:0005515
Phco3g00251 888 MobiDBLite consensus disorder prediction 377 397 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 1 170 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 692 710 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 865 888 - -
Phco3g00251 888 Coils Coil 103 142 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 836 888 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 107 133 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 651 678 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 1 16 - -
Phco3g00251 888 SUPERFAMILY Bromodomain 152 271 IPR036427 GO:0005515
Phco3g00251 888 MobiDBLite consensus disorder prediction 63 81 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 628 678 - -
Phco3g00251 888 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00251 Phco-Chr3 1820369 1825148 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00251 3 1820369 1825148 Phco3g00251 3 1820369 1825148 ECH
Phco11g01992 11 16235146 16240813 Phco3g00251 3 1820369 1825148 PCT