Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01992 ATGGTCCAGATCGCGAGGAGGAAGAAAGGGCGGCCGTCAAAGGCGGATCTGGCGCGCCGTTCCGGTGATTCTCCGGCAGCCGAGTCGCCGCCCGATCTCCGGCGAAGCCACCGGCGCCGGAGCGTGAGGTACAACATCATCGACTACGACGGCGACTACCTCGACGACGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCATGGCGAAGCTTAACCAGGATGGCGAAGAAGAGCGTGAAGAAGAAAACGACACGACGCGGAACGGCACTTGCGCTGATGCACCGGCGGAAGAATACGAAGACGACGAAAACGAGCAAGAGGAAGAGCACGAACACGAGCAAGAGGAAGAGCATGAAGAAGACGAAGACTGCGTGGTAAAGGGCAGAAAAGTAGAATCGAAAGGGCTCCACTCTATTTCTGTTTCAGGAACTCCGGTGATTCTTCAATCTGGGATTCCGTTGCCTGATAAGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTATGGTGTGTTTGCGGAGCCTGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGACCATCCTATGGACTTTGCCACTGTGAGGAAGAAGTTGGCAGCTGAATCTTATACTACCTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATATAATGCAGCAGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAATTAAGGATTGGCTTTGAACGATCTCAGATGGAGCAGAAATCAGAACAAAAAGCAGGATCTAATTATTTGGTTAAGAAGCAACCAAAGAAGCCTCTAGTACGTGCCTCACAGGAACCTGTTGGTTCTGATTTCTCTTCAGGAGCAACTCTTGCTACTATTGCAGATATACAGCCAACTTCCCATCCGATGCAAGGGGGTAGATGTGAGAGGCCTGGCAATATTGATGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGACTTTTTATCAGGGAAAGGCCTTCACTCTAATAAGTGGGGAAGGAAGCCCATTGTGCTTGACGAAAGTCGGCGTGCATCTTATAACATTTCCAGTCAACCAATTGGTCGTTCAGAATCAATTTTTATGACTTTTGACAGTGAAATGAAGCAGCTGGTTGCTGTTGGACTTCATGCAGAATATTCCTATGCTAGAAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCCATTGCTTGGAAAATTGCTTCCCACAGGATTGAGCAGGCACTGCCACCTGGCTTTAAATATGGTCCTGGTTGGGTTGGAGACTATGAACAGCTTCCAACCCCAATATTAATGGTTAATAATCAGGTCCAAAAAGCAACTAGTTTGGTCATGAAGTTGCATTCTACTATTGAATTAACAAAGGCTGACAAAAATTGTAAGAATGTGGAACCCAGCATTGAACATCCTGTACATGGACAGAGGCTTGAAGGAAAATATCCTTTGATGCCTGATTCCGAAGGAAAACCTTTCTCTGGTTCTGCTGGAGTAAGGCTCTGTGCTCCTGCCAACATCCTAAATCAGGAGCAGAACAAACAATCCAGGAAAATAGGCAAACCTGAAGATAAGGGTTTGAAACAAGACGGGTTGAATTCTTTATCCTCAAGTAAGCAGAATAATAATGGTCTGGGTGCAAAGTTTACTAGTAACACTCCTGCAGCAGAGTCCAAGCCCACAGAGATGGTGCCAGGGAACATGTTCAAGCAGCCAGATGTTAGTGGAGAGTTGCCTAATGGAAAAGTCACAAATACAAGTTTGAACAGACAGGTCACTGGTCCATCACCCGAAAGTACATCAAACCAATCAAGCAGGGCAGGTCCTGTTGTCCATGGGAAGGAGCTAGGTGTTTGTGATCCTGTTCAGTTGATGGGAATGTTTGCAGAAATGGCTCAAAAGCAACACAATTCCAATCATTTGCTTGTTGATACTCCACCAGTGACACTATCGAGTCCATCTGGACAGAGAGATGATTTAGGCAATGCTTCGGCAGCAGCTGCCCGTGCATGGATGTCTGTTGGGGCTGGAGGGTTCAGACAAGGTCCGGATAATTCTAGTTCACCCAAAAATCAGATATCTGCAGATTCTTTGTACAACTCAACAAGAGAGTTCCATCAGCATATTTCAAGAATTCGAGGGGAGTTTCCCTCTGCTGGAATGCCTTTCCAACCATTTCAAGCACTTGCTCCTCAATCTAGTCAGACTGGCACTGTTTCACAGTTTCCCAACCGGCCTATGGTTTTCCCTCTGTTAGCATCTGCTGACCAATCTAGATTTCAGATGCAGTCCCCTTGGCGAGGACTAAGTCCTCGTAGCCAGTCAAGGCAGAAACAGGAAACCTTTCCACCTGACCTGAATATTGGTTTTCAACCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGTCCTTGTTGACTCACAGCAACCGGACCTGGCTTTGCAACTATGA 2538 0.463 MVQIARRKKGRPSKADLARRSGDSPAAESPPDLRRSHRRRSVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQDGEEEREEENDTTRNGTCADAPAEEYEDDENEQEEEHEHEQEEEHEEDEDCVVKGRKVESKGLHSISVSGTPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFATVRKKLAAESYTTLEQFESDIFLICSNAMQYNAAETIYHKQARSIQELGRKKFEKLRIGFERSQMEQKSEQKAGSNYLVKKQPKKPLVRASQEPVGSDFSSGATLATIADIQPTSHPMQGGRCERPGNIDGILEANAFWIDANQEKAEDFLSGKGLHSNKWGRKPIVLDESRRASYNISSQPIGRSESIFMTFDSEMKQLVAVGLHAEYSYARSLARFSASLGPIAWKIASHRIEQALPPGFKYGPGWVGDYEQLPTPILMVNNQVQKATSLVMKLHSTIELTKADKNCKNVEPSIEHPVHGQRLEGKYPLMPDSEGKPFSGSAGVRLCAPANILNQEQNKQSRKIGKPEDKGLKQDGLNSLSSSKQNNNGLGAKFTSNTPAAESKPTEMVPGNMFKQPDVSGELPNGKVTNTSLNRQVTGPSPESTSNQSSRAGPVVHGKELGVCDPVQLMGMFAEMAQKQHNSNHLLVDTPPVTLSSPSGQRDDLGNASAAAARAWMSVGAGGFRQGPDNSSSPKNQISADSLYNSTREFHQHISRIRGEFPSAGMPFQPFQALAPQSSQTGTVSQFPNRPMVFPLLASADQSRFQMQSPWRGLSPRSQSRQKQETFPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01992 845 MobiDBLite consensus disorder prediction 559 587 - -
Phco11g01992 845 MobiDBLite consensus disorder prediction 1 128 - -
Phco11g01992 845 ProSiteProfiles Bromodomain profile. 171 241 IPR001487 GO:0005515
Phco11g01992 845 MobiDBLite consensus disorder prediction 98 124 - -
Phco11g01992 845 MobiDBLite consensus disorder prediction 42 90 - -
Phco11g01992 845 Pfam Bromodomain 165 245 IPR001487 GO:0005515
Phco11g01992 845 SMART bromo_6 152 260 IPR001487 GO:0005515
Phco11g01992 845 Coils Coil 99 119 - -
Phco11g01992 845 CDD Bromodomain 159 255 - -
Phco11g01992 845 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 844 - -
Phco11g01992 845 MobiDBLite consensus disorder prediction 822 845 - -
Phco11g01992 845 Gene3D - 158 278 IPR036427 GO:0005515
Phco11g01992 845 MobiDBLite consensus disorder prediction 536 642 - -
Phco11g01992 845 MobiDBLite consensus disorder prediction 789 845 - -
Phco11g01992 845 MobiDBLite consensus disorder prediction 789 813 - -
Phco11g01992 845 PRINTS Bromodomain signature 222 241 IPR001487 GO:0005515
Phco11g01992 845 PRINTS Bromodomain signature 174 187 IPR001487 GO:0005515
Phco11g01992 845 PRINTS Bromodomain signature 204 222 IPR001487 GO:0005515
Phco11g01992 845 PRINTS Bromodomain signature 188 204 IPR001487 GO:0005515
Phco11g01992 845 MobiDBLite consensus disorder prediction 607 637 - -
Phco11g01992 845 Coils Coil 54 74 - -
Phco11g01992 845 ProSitePatterns Bromodomain signature. 177 233 IPR018359 -
Phco11g01992 845 SUPERFAMILY Bromodomain 156 258 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01992 Phco-Chr11 16235146 16240813 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01992 11 16235146 16240813 Phco11g01992 11 16235146 16240813 ECH
Phco11g01992 11 16235146 16240813 Phco3g00251 3 1820369 1825148 PCT