Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00247 ATGGAGGAGCAGACTTTCGTGTCGAAAGCGAGGTTCGCCTTCCATTCCGCGGCGGCGAAAGCGGAGCGCGTGCTTATGGATTTCAAATCTGATCGAGAAGATCACGATAGGCACTCGTCGCCGGAAGCTGATTCTCCCAACAACAACAACAACAACAACGAAAGCGAGTCCAAGATTCGCAGTGAATTGAAGCATATAAAGTGGAGGCCTCCACATTTAGGAATAAAGCAGGATTGGCAAGATAGAATAAAGAACATCCGGAGAGGGAGAAAAGAAGTTGAAGATACAGATAAAGTTGGGGATGCGAACATGGCAATTCCATTTTACGATGATAATTTGTACACGCTGAATGTGAAGAATGATCTTGATGCCAAGGCTTCAGAATCATTTCCTTCAGTTGAAAGCCTAACTGCTGCAACTAAAGATCCCATTCCTCCGTCATCTGTACTCAAGCAATTGGCTGTAGCTGTTGAGGCTGGAAGTAAAGTGAAGTCTATGAAAGAATTTATAGCTTCACCAGGAGGTTCTTCACCCGCTAAAGAGAGGGCAGGCTTGAGTCTCTCTGCAGTTAAGGCTTTAGTGCTACGTGAAAAGGAGAACAATCTTACTTCGGAGTTTAGTAGCAATGAGAAAGTTGTGCAGTTAATCAGTTCTCTGTTTGATCCAGAGGGAGATTTCCTAACAAGAAAGATCAACTCTAATATTGAGGAAACTGCCATGACATCTTTGCCAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTTGTTAAGCTAGCTGAAATCATTGGAAACTACAAGACTGTCCGTAAAATGGCTCTTTTCTGGTGCAGTGTTGTTGCTGAACTAAGAAAACTTTGGTACGAGGAGCAACACTTACCTGGAGTTCCCCAGAACGAGATTCCTGATTTGAAGTCATGTCTTCTATATCAACATTTTCAAGTAATTAATTGCTGCATCTCTCGGAAAATGTTCCGTACTATTGCCACTGAATCTCTAGACTCTATGATGATACAAGCTAGTTCAGACACAAAAGAATCATCTGATTATAAAGTTGGAGCTCCTGCAAGCCCTGTTCTATATGCTAGAGTAAACAGTGGGGAGCTTGTTCTACGACTTGGTGCAGATCGTCTTGCTGGAGATATGACACTGTTGGAAACTGGCGAGCCTGTGTATTCTCCACTCACCCAGGAAGGGCCTTTGCTTACAGAAGATCTAATCAAGGAAACAGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCCCAATTGCTGTCTGATATGCAAGCTTTCAAGGCCGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGACAATGAGGCAAGTGTCGAGGATAGTGATGTTTTTGATAGTGGTGAGTTATTGTCTGCCAGAGGTCAGCTTAGTCGGCGAATGCAAAAAGAAGGTAATTTGTGGCGTGAATTGTGGGAAACATCAAAATCAGTACCAGCTGTTAAGCAGGCACCTCTGTTTGATGAGGATTTGGCAGTGGAGGGCATCCTAAATGCTTTTGAGGACATCCATCCATCTGATCTTTTTGAACAGCTGTTTGTTTCTTTGCTTGGTTTAGGGTTTGCAATTGCTGAACCTATGCTGTCTAGTAACAGTGACTTCTCGAAGTTATTCTATGACTGCAAGGAGTACATAGTTGCTGCTTGTCAAAGCAGCAAATTGAATGAGAAAGTTGATGATCTTGTGCAGGCATATGAAACAGTGGAGAGAATGTTATTGAATCCTGAAGAAGCACTAAAGATGATTAAGCAGACAGAGGAATCAGCTATGGTTACTGATGAACCAAAGAGCCCGTTGAAGAGGCTTAGCCTTATCTTTGCTGGCAAAGATAAACTATTGAGGAAGTCTGTCTCAAAGGATCAGATGAATGATGAAGAAAAGTCTGGTCGGCAATCATTCTCAAGTTTCTTTGATAGCAGGTCATCTTTGTTCTCAAAGAAGCCGCCAAAGTCTGGATCCCCATCTCCTTCTGAGAAATCTTCTCTCGATGCTGGTTGGACAGTTGTATAG 2079 0.4334 MEEQTFVSKARFAFHSAAAKAERVLMDFKSDREDHDRHSSPEADSPNNNNNNNESESKIRSELKHIKWRPPHLGIKQDWQDRIKNIRRGRKEVEDTDKVGDANMAIPFYDDNLYTLNVKNDLDAKASESFPSVESLTAATKDPIPPSSVLKQLAVAVEAGSKVKSMKEFIASPGGSSPAKERAGLSLSAVKALVLREKENNLTSEFSSNEKVVQLISSLFDPEGDFLTRKINSNIEETAMTSLPRDIHGAPPESLVVKLAEIIGNYKTVRKMALFWCSVVAELRKLWYEEQHLPGVPQNEIPDLKSCLLYQHFQVINCCISRKMFRTIATESLDSMMIQASSDTKESSDYKVGAPASPVLYARVNSGELVLRLGADRLAGDMTLLETGEPVYSPLTQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASVEDSDVFDSGELLSARGQLSRRMQKEGNLWRELWETSKSVPAVKQAPLFDEDLAVEGILNAFEDIHPSDLFEQLFVSLLGLGFAIAEPMLSSNSDFSKLFYDCKEYIVAACQSSKLNEKVDDLVQAYETVERMLLNPEEALKMIKQTEESAMVTDEPKSPLKRLSLIFAGKDKLLRKSVSKDQMNDEEKSGRQSFSSFFDSRSSLFSKKPPKSGSPSPSEKSSLDAGWTVV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00247 692 MobiDBLite consensus disorder prediction 640 692 - -
Phco3g00247 692 Pfam Rab3 GTPase-activating protein catalytic subunit 372 524 IPR026147 -
Phco3g00247 692 Coils Coil 76 96 - -
Phco3g00247 692 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 61 690 IPR045700 GO:0005096|GO:0043547
Phco3g00247 692 MobiDBLite consensus disorder prediction 25 59 - -
Phco3g00247 692 MobiDBLite consensus disorder prediction 651 692 - -
Phco3g00247 692 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00247 Phco-Chr3 1779106 1787556 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00247 3 1779106 1787556 Phco3g00247 3 1779106 1787556 ECH
Phco11g01985 11 16187063 16194014 Phco3g00247 3 1779106 1787556 PCT