Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00224 ATGCGGAAGGGAAGAGGAGGGGCCGCGTCGGTTGTTACGGCGGCGGCTGCGGCGGCCAACGGATCCCTTTTAAAGGAGCCTCGGTACCGGGGCGTCAGAAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTACGACACTGCTGCTCGGTCTCTCCGAGGTCCCAAAGCCAAAACAAATTTCCCTCTCTCACACCCTTTTTGCTATCCGCACCCCACCACCAATCCTCTCTTCTACGCGGGTTTCCACGACAACAACCACAACAGCAGCCTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGTAGCACGGTGGAGTCCTTCAGCGGACCCCGTCCTCCCACCGCCGCCGCCACATCCATGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTTGTCCCCGAAGATTGCCATAGCGACTGCGACTCTTCCTCGTCCGTCGTTGACGACGGTGACAACATAGTCTCCTCGTCGTTCCGCCCTCCCCTGCCCTTTGATCTCAACGCGCCGCCGTTCGACGATGCTTCCGCAGATGACGATCTCCGCTGCACCGCGCTCTGCCTCTGA 654 0.6055 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDTAARSLRGPKAKTNFPLSHPFCYPHPTTNPLFYAGFHDNNHNSSLNNPQRPTSSGMSSTVESFSGPRPPTAAATSMTPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPPFDDASADDDLRCTALCL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00224 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 182 - -
Phco3g00224 217 MobiDBLite consensus disorder prediction 109 194 - -
Phco3g00224 217 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Phco3g00224 217 MobiDBLite consensus disorder prediction 168 182 - -
Phco3g00224 217 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Phco3g00224 217 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Phco3g00224 217 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Phco3g00224 217 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Phco3g00224 217 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Phco3g00224 217 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Phco3g00224 217 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Phco3g00224 217 MobiDBLite consensus disorder prediction 109 153 - -
Phco3g00224 217 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00224 Phco-Chr3 1633874 1634527 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco3g00224 AP2 7.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00224 3 1633874 1634527 Phco3g00224 3 1633874 1634527 ECH
Phco11g01967 11 16029616 16030239 Phco3g00224 3 1633874 1634527 PCT