Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01967 ATGGGTGGTGGCGACGCTGGGGAATCCGGTTCAAGGCCGGTGTTTTTCAAAGAACAGAAATACCGCGGCGTCCGGAAGAGGCCGTGGGGCCGGTTCGCCGCCGAAATCCGAGACCCTTTGAAGAAAGCAAGGGTTTGGCTCGGAACTTTTGACTCCGCCGAGGATGCGGCGCGTGCGTACGACACGGCGGCGAGAAACCTCCGGGGACCCAAGGCAAAGACCAACTTCCCCCTCCCTCCGCCGTTCTACCATCCCGATCCGTTCACCGACCATCGGTATTTCGCAGGTTCCGGCGAGCCCTTTCACGATCACCGGCAACCCACCTCAAGCGGCATGAGCAGCACCGTCGAGTCCTTCAGCGGCCCACGCGCCACCGCCCCCAGGGCGACTCCGGTGGCCGTCGCCCGGAGGTACCCTCGAACGCCGCCGGTAGTCCCCGAGGACTGCCTCAGCGACTGCGACTCTTCGTCCTCCGTCGTGGAAGACGGCGACGGCGACAACGCGGCGTCGTCGTTTCGGCGAGAACCGTTGCCGTTTGATCTTAACGTGTTGCCGTTGGAGGACGCCGATGTTCCAAACGGTGGCGTGGATAGTGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6282 MGGGDAGESGSRPVFFKEQKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDTAARNLRGPKAKTNFPLPPPFYHPDPFTDHRYFAGSGEPFHDHRQPTSSGMSSTVESFSGPRATAPRATPVAVARRYPRTPPVVPEDCLSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNVLPLEDADVPNGGVDSDMFCTVLCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01967 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Phco11g01967 207 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Phco11g01967 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 182 - -
Phco11g01967 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Phco11g01967 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Phco11g01967 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Phco11g01967 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Phco11g01967 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Phco11g01967 207 MobiDBLite consensus disorder prediction 103 121 - -
Phco11g01967 207 MobiDBLite consensus disorder prediction 103 173 - -
Phco11g01967 207 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Phco11g01967 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01967 Phco-Chr11 16029616 16030239 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco11g01967 AP2 3.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01967 11 16029616 16030239 Phco11g01967 11 16029616 16030239 ECH
Phco11g01967 11 16029616 16030239 Phco3g00224 3 1633874 1634527 PCT