Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00205 ATGGCACCCTCGATCTGTTTCCTTCTTTTATGCATTCTGTTCCTTTCATCCTCCACGACTGGCGTTCAAGATCATGAAGAGGGTTTTATCTCTATCATCATATCTGATAAGGGCCTTGATTTTGCCAAGGATGTTCTGATAGACCAAGCTGTTGCCTCTATTGTTCTGTCTCAGTTGCCACAGATTGAGAAGACTGTTCAAGTCCCTCTTGTTGGAAAAGCCAAAGTTGTTCTTTCTGAAATCTCTATTAATGATATCCAAGTAAATTCTTCATCTGTTAATACAGGAGAGACAGGCATTGCTCTTGTTGTTTCAGGAGCCACTGCTAACTTGAGTTTGAATTGGAGGTACTCTGTCAGCAGTTGGTTAGTCCCAATTGGAATTTCTGATAGTGGAACAGCAACTGCAAGGGTTAATGATTTGCAAGTTGGACTTACTGTGAATTTAACGAATAAAGAAGGAACTCTTAAGCTGCTTCTCCTGGATTCTGGATGCCATGTCAGAGATTTATCCATAAAATTGCATGGCGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAGTATAGCATCTGCAGTTGAAGAGGCAGTTTCTGAGAAAATAAATGAGGGGATATCAACTCTTGATATTTTATTGCAATCTCTTCCAAAGACTATCTCATTAGACGAAACAGCTGCTCTAAATGTTTCTTTCGTTAACAATCCTGTGCTAAGTGATTATGCTATTGAATTAGCCATCAATGGTTTATTCACTGGAAGGAATGAAATTTTGGCACCTCAAGGTTACCGCAGAGGTTCAGACATTTCTGTTTTCCCTGTTGACCCTTCACCAAAGATGATAACAATTTCATTGCATGAAAATGTTTTCAAATCCGGTTCCTTGGTTTACTTCACTGCAGATACTTTGCAGTGGACTGTTGATGAACTACCTGATCAAGACCTTCTGAACACTGCTGAATGGAGATTCCTTATTCCTCAATTATACAAGCAATATCCAAACGATGACATGAATCTTAATATCTTTGTATCTTCTCCACCGGATATACAGGTGACAAACAAAGATGTTGGTGTCAAAATTTCCATAGATATAATACTTAATGTTCTGGAAGCTGGTGAAGTCATACCTGTTGCATGCATCTCGGTGGATTTTAGTGCATCTTGTGCTGCGGAGATCTTAGGAAACAATCTTGCTGGTTGGCTTAAATTGAAAAAGTTTTCCACATACTTGAAATGGAGTAAAATAGGGAAACTGCACATGAATCTGATTCAGTCAGTGACATCAAGTGTCCTCAAAACCGTCCTCATACCATACCTGAACTCACAGTTAATGAGGGGAATTCCATTGCCGATTCTTAATGATTTTGCTCTCGAGGATGCTCGTATATTGTATGCTCCCCCATGGATTACTGTGTCTAGTGATGTTTCTTTCTTAGGAGACTATTATCACAAGCAACTACCAGCTTATGTATCATAA 1485 0.3946 MAPSICFLLLCILFLSSSTTGVQDHEEGFISIIISDKGLDFAKDVLIDQAVASIVLSQLPQIEKTVQVPLVGKAKVVLSEISINDIQVNSSSVNTGETGIALVVSGATANLSLNWRYSVSSWLVPIGISDSGTATARVNDLQVGLTVNLTNKEGTLKLLLLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGSIASAVEEAVSEKINEGISTLDILLQSLPKTISLDETAALNVSFVNNPVLSDYAIELAINGLFTGRNEILAPQGYRRGSDISVFPVDPSPKMITISLHENVFKSGSLVYFTADTLQWTVDELPDQDLLNTAEWRFLIPQLYKQYPNDDMNLNIFVSSPPDIQVTNKDVGVKISIDIILNVLEAGEVIPVACISVDFSASCAAEILGNNLAGWLKLKKFSTYLKWSKIGKLHMNLIQSVTSSVLKTVLIPYLNSQLMRGIPLPILNDFALEDARILYAPPWITVSSDVSFLGDYYHKQLPAYVS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00205 494 Pfam LBP / BPI / CETP family, C-terminal domain 278 478 IPR001124 GO:0008289
Phco3g00205 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 31 242 IPR017943 GO:0008289
Phco3g00205 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 246 480 IPR017943 GO:0008289
Phco3g00205 494 PANTHER OS06G0309200 PROTEIN 2 489 IPR045897 -
Phco3g00205 494 Gene3D - 32 465 - -
Phco3g00205 494 Gene3D - 37 217 - -
Phco3g00205 494 SMART bpi2_2 278 476 IPR001124 GO:0008289
Phco3g00205 494 PIRSF Lipid_binding_protein 7 484 IPR030675 GO:0005615|GO:0008289
Phco3g00205 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 212 IPR017942 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00205 Phco-Chr3 1500380 1504728 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00205 3 1500380 1504728 Phco3g00205 3 1500380 1504728 ECH
Phco11g01940 11 15823132 15829802 Phco3g00205 3 1500380 1504728 PCT