Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01940 ATGGCACCCTCTATTATTTTCTCTTTGTTGTGCCTTCTGTTGGTTTCGACATGTGGTTATGTGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTGTTATGCTTCAGCTGCCAGAGATTGAGAATTCTGCCCAAGTTCCTCTTGTTGGAAATGCTAAAGTGATTCTTTCTGACATAACAATTACGGATGTTCAAGTCAATTCTTCATCTGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTATTTCAGGTGCCATTGTTGATTTAAGTATGAGGTGGAGGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTTGGGCTTACCTTAAATTTAAGGAACCAAGAAGGAACTCTGAGGTTGTCTCTCCTAGATTATGGATGTCATGTGGGAGACTTGTCTATAAAGTTGGACGGAGGTGCATCTTGGCTTTACCAACTGCTAATAGATGCTTTTGAAGGGAATATAGCATCTGCCGTTGAAGAGGGCATTTCAGAGAAAATAAAAGAAGGGATAGTGAAGCTTGACAATTTTTTGGAATCTCTTCCAAAGAAGATCTCACTAGACAATTCTTCTACACTAAATGTTTCTTTTGTTGGCGATCCTGTGATGAGCAGTTCCTCCATTGCAATTGCAATTAATGGTTTATTCACAGGGAAAAAGGAAGTTTTACTACCTCAAGGTTACCACCACAAAAAATTGAAGATTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAGTGTGTTCAAATCTGCTTCCGAAGTTTACTTCAATGCAGGTAAAATGCAATTGATTGTTGATGAACTGCCTGATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCCAATTATACAAGAGATATCCAAATGATGATATGCAGCTTAATATCTCTATATCTTCTCCACCAGTTATACAAGTGACATATCAAGATGTTGGTGCAACTATTCTTGTAGATATAACAATTGATGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATGCATCTCAGTGGAAATTAGTGCTTCATGTGCTGTAGAAATGGTAGGAAATGACATTGTTGGTAGGCTCACATTACAGGAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAATTGCACATGCTTCTGATTCAGTCACTCGTGTCAAGTGTCCTCAAAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTCCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTAAAATCTTGTACAACCATCCATGGATTGCAGTGTGTAGTGATGTTTCCTTCTTAGAAGATTACTATTTAGATCCACAATCAACTTTAGCTTATGTTTCATAA 1488 0.3824 MAPSIIFSLLCLLLVSTCGYVQPLEEGFISGVISDKGLEYAKELLIEKGIASIVMLQLPEIENSAQVPLVGNAKVILSDITITDVQVNSSSVKTGENGIVLVISGAIVDLSMRWRYTVSSWLIPIGISDKGTASVKVTGMQVGLTLNLRNQEGTLRLSLLDYGCHVGDLSIKLDGGASWLYQLLIDAFEGNIASAVEEGISEKIKEGIVKLDNFLESLPKKISLDNSSTLNVSFVGDPVMSSSSIAIAINGLFTGKKEVLLPQGYHHKKLKISSACGGLPKMIKVSIHESVFKSASEVYFNAGKMQLIVDELPDQAILNTAEWRFIVPQLYKRYPNDDMQLNISISSPPVIQVTYQDVGATILVDITIDVLEDFEVIPVACISVEISASCAVEMVGNDIVGRLTLQEFSTYLKWSKIGKLHMLLIQSLVSSVLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAKILYNHPWIAVCSDVSFLEDYYLDPQSTLAYVS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01940 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 479 IPR017943 GO:0008289
Phco11g01940 495 PIRSF Lipid_binding_protein 6 483 IPR030675 GO:0005615|GO:0008289
Phco11g01940 495 Gene3D - 32 465 - -
Phco11g01940 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Phco11g01940 495 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Phco11g01940 495 Gene3D - 36 216 - -
Phco11g01940 495 SMART bpi1_3 33 258 IPR017942 GO:0008289
Phco11g01940 495 Pfam LBP / BPI / CETP family, C-terminal domain 280 467 IPR001124 GO:0008289
Phco11g01940 495 FunFam phospholipid transfer protein-like 36 216 - -
Phco11g01940 495 PANTHER OS06G0309200 PROTEIN 2 485 IPR045897 -
Phco11g01940 495 SMART bpi2_2 277 482 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01940 Phco-Chr11 15823132 15829802 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01940 11 15823132 15829802 Phco11g01940 11 15823132 15829802 ECH
Phco11g01940 11 15823132 15829802 Phco3g00205 3 1500380 1504728 PCT