Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00195 ATGCCGAACCAAGATATTTGCAGTTACCTTAAAGAACCTCGTCTAGTAGCCAGAAAGTTCTTGGCCAGACCTCAACATGAGGGTGTTGGGGCAGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGAACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACTGCTCCAGCTGGGTTTCCTGATCATCCACACAGAGGATTTGAGACAGTCACATACATGTTGCAGGGAGCTATAACACATGAAGATTTTGAAGGACGAAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACAGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTCCAGCTGTGGATCAACCTCTCTTCAAAACATAAAATGATTGAGCCAAGGTACCAAGAAATGCTGAGCAAGGACATAGCAGAAACTATGAAAGATGGGATCAAAGTTAGAGTGATAGCAGGGGAAGCTCTTGGAATAAAGTCTCCAATCTACACAAGGACACCAACCATGTACTTGGATTTTTCCCTTAAACCTGGTGCTCACTTGCAGCAACCTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAAGGTGTTTTTGGGAACCAAAAGTCTCAACCTGTGACTTCTCATCATATACTTCTTCTTGGTTCTGGGGATGGCCTTGAGGCATGGAACAAATCTTCTAAGGTTCTTAGGTTCATTTTGGTTGGAGGGGAACCATTGGGAGAACCTGTGGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTATGAGAATTATACCAATGGATTTGAGAAAGCAAGACACTGGAGATCTGAAAGTGCACTCAGCCTTGATTATTGA 906 0.4327 MPNQDICSYLKEPRLVARKFLARPQHEGVGAVVRRSIGRFELKNFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGRKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKHKMIEPRYQEMLSKDIAETMKDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQPIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDYENYTNGFEKARHWRSESALSLDY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00195 301 CDD cupin_pirin_C 176 252 - -
Phco3g00195 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Phco3g00195 301 PANTHER PIRIN-RELATED 10 295 IPR012093 -
Phco3g00195 301 CDD cupin_pirin_N 31 128 - -
Phco3g00195 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Phco3g00195 301 PIRSF Pirin 12 292 IPR012093 -
Phco3g00195 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Phco3g00195 301 FunFam pirin 27 165 - -
Phco3g00195 301 Pfam Pirin 33 126 IPR003829 -
Phco3g00195 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00195 Phco-Chr3 1409320 1412110 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00195 3 1409320 1412110 Phco3g00195 3 1409320 1412110 ECH
Phco11g01921 11 15621813 15624996 Phco3g00195 3 1409320 1412110 PCT