Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01921 ATGCCACTGAGAAAAGGTTGCAGTTTTTTTAATGAGCCTTGTCTTGTTGCCAAGAAATTCTTGGCTAGACCTCAGCATGAGGGCGTTGGAGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTTTGTTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCTCATAGAGGCTTCGAGACAGTCACATACATGTTGCAGGGAGCTATCACGCATGAAGATTTTGAAGGACACAGGGGGACTGTAGAAGCTGGTGACTTGCAATGGATGACTGCTGGGAGAGGGATTGTGCACTCAGAAATGCCTGCTGCTCAAGGAACCCAAAAGGGTCTTCAATTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGATGGTGTGAAGGTAAGAGTTATAGCTGGTGAAGCAGTAGGGATAAAGTCTCCAATCTACACAAGGACTCCAACCATGTTCTTGGACTTCTCTCTCAAACCAGGAGGTCACTTGCAGCAACCTATACCAAAATCTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAACCTTCAAATTCTCACCATATTCTTCTTCTTGGTCATGGTGATGGCCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGGAGAACCTTTGGGGGAACCTCTGGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGAGAACTTTACAAACGGATTTGAAAAAGCAAGAGATTGGAGATCTGAAAAGAAAATTAATTAA 900 0.4244 MPLRKGCSFFNEPCLVAKKFLARPQHEGVGAVVRRSIGRFELKYFDPFLLLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHRGTVEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDIAEAEDDDGVKVRVIAGEAVGIKSPIYTRTPTMFLDFSLKPGGHLQQPIPKSWNAFVYILEGEGIFGNMKSQPSNSHHILLLGHGDGLEAWNKSSKLLRFILVGGEPLGEPLVQFGPFVMNTQEEIDQTIDDFENFTNGFEKARDWRSEKKIN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01921 299 PIRSF Pirin 12 293 IPR012093 -
Phco11g01921 299 FunFam pirin 27 168 - -
Phco11g01921 299 Pfam Pirin C-terminal cupin domain 180 284 IPR008778 -
Phco11g01921 299 Gene3D Jelly Rolls 27 280 IPR014710 -
Phco11g01921 299 CDD cupin_pirin_N 31 128 - -
Phco11g01921 299 Pfam Pirin 33 126 IPR003829 -
Phco11g01921 299 PANTHER PIRIN-RELATED 10 296 IPR012093 -
Phco11g01921 299 CDD cupin_pirin_C 177 253 - -
Phco11g01921 299 SUPERFAMILY RmlC-like cupins 16 294 IPR011051 -
Phco11g01921 299 Gene3D Jelly Rolls 148 254 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01921 Phco-Chr11 15621813 15624996 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01921 11 15621813 15624996 Phco11g01921 11 15621813 15624996 ECH
Phco11g01921 11 15621813 15624996 Phco3g00195 3 1409320 1412110 PCT