Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00189 ATGATCTGTTGTCATTTGCTGGCTCCTCCAAATATTCTTGCACGATTTGCAGTGTGTGTCTGTCTCTCTCTTTCTTTCACTAACTGGGTTCTGTCTGGGATTCAAGATAAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCCTGGGACACTGATGAGGAACGTCTCAGAGAATATTTTGGTAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGTGGTTTCGGTTTTGTTGTCTTTTCGGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGCAGTCTGGTGGCATCCAAGGATCTCCAGGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAATTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAGCCCAATTGGAAATTATGGAGTCAAGATGGAAGGAAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTGGTTATGGTGGCAGTCTTGGATATGGTCGGATAAGTCCCTTGTACAATGGCAACCCCAACAGATATACCACTCCTATTGGCAATAATGGGGGAAGTGGGAGAACCGATTCTCTAATGAACTCAGCTTCTAGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCCAATAATCCAGCCAGCCCTGGCTCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATCGGAAATAGTGGAGCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGGGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGGTTATGAAGGATCTTATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCAGTCTGCTGCTTCTGAAATGGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGTATGGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCGTAG 1551 0.4481 MICCHLLAPPNILARFAVCVCLSLSFTNWVLSGIQDKMESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQQSGGIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRTSSFLNSYAQGFNMSPIGNYGVKMEGRFSPLTSARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSGYGGSLGYGRISPLYNGNPNRYTTPIGNNGGSGRTDSLMNSASRSVWGNGGLNSAANNPASPGSYLGSGSGAFGVSIGNSGANWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGGYEGSYGDLYRSGSVYSDSTWQSAASEMDASGSFGYGGLGGMASDDPVKSSEGFIGNYNVISRQTNRGIAA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00189 516 SUPERFAMILY RNA-binding domain, RBD 35 142 IPR035979 GO:0003676
Phco3g00189 516 Gene3D - 43 124 IPR012677 -
Phco3g00189 516 CDD RRM2_Hrp1p 145 222 - -
Phco3g00189 516 CDD RRM1_hnRNPA_hnRNPD_like 45 115 - -
Phco3g00189 516 SMART rrm1_1 44 115 IPR000504 GO:0003723
Phco3g00189 516 SMART rrm1_1 145 217 IPR000504 GO:0003723
Phco3g00189 516 FunFam Heterogeneous nuclear ribonucleoprotein 1 141 228 - -
Phco3g00189 516 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 38 511 - -
Phco3g00189 516 FunFam Heterogeneous nuclear ribonucleoprotein 1 42 124 - -
Phco3g00189 516 SUPERFAMILY RNA-binding domain, RBD 143 231 IPR035979 GO:0003676
Phco3g00189 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 204 IPR000504 GO:0003723
Phco3g00189 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 112 IPR000504 GO:0003723
Phco3g00189 516 Gene3D - 143 223 IPR012677 -
Phco3g00189 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 119 IPR000504 GO:0003723
Phco3g00189 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 221 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00189 Phco-Chr3 1369162 1372989 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00189 3 1369162 1372989 Phco3g00189 3 1369162 1372989 ECH
Phco11g01900 11 15359714 15362993 Phco3g00189 3 1369162 1372989 PCT