Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01900 ATGCTCGGAAGATCCGATGCTCCTAGATCGAATTTGACAAAACCCACTTCGTCTCTGATCGAAGCAACAACTGGGTTCTGTCTGAATTTTGAGATAAGATTGGTTCCTTGGCTTGAATTTAGGCCATCATTGAGTGATTTGGATATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGCGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCAAAGAAAGCAGTTCCTAGGGATGATCAGCTCAATATAAATAGGCAGCAGCAGTCTGGCAGTGCACACGCATCTCCTGGTCCAGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTATAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTATATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAACCGAAGCCCATTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACTGGGGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTATGGAATGGGGATGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAATGGCAACTCTGGCAGATATACCACTCCTATAGGCTATAGTGGGGTCAATGGGAGAAGTGATTCTCTTATGAACTCACCTTCTCGGAATTTATGGGGAAATGGAGGCCTCAATAATGCCAGTAATCCTATCAGCCCCAGCCCTTTCCTAGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATGTTTATGAAGGTGGTGATAGCAGCTTTGGTCTAGGTGGGGCAGGTTATGGAAGAAACAACAGTTCAGGTGCGACGCCAGCCTCTACATTTAATGTGTCAACTGGTGGTTATGAAGGATCGTACGGGGACTTGTACCGTACTGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGTTCTGCTGTCTCTGAGATTGATGGTTCTGGTTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1590 0.4428 MLGRSDAPRSNLTKPTSSLIEATTGFCLNFEIRLVPWLEFRPSLSDLDMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNINRQQQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTIIDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGMNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYNGNSGRYTTPIGYSGVNGRSDSLMNSPSRNLWGNGGLNNASNPISPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYEGGDSSFGLGGAGYGRNNSSGATPASTFNVSTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFGYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01900 529 CDD RRM1_hnRNPA_hnRNPD_like 56 126 - -
Phco11g01900 529 SMART rrm1_1 55 126 IPR000504 GO:0003723
Phco11g01900 529 SMART rrm1_1 157 229 IPR000504 GO:0003723
Phco11g01900 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 123 IPR000504 GO:0003723
Phco11g01900 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 216 IPR000504 GO:0003723
Phco11g01900 529 CDD RRM2_Hrp1p 157 234 - -
Phco11g01900 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Phco11g01900 529 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 49 525 - -
Phco11g01900 529 MobiDBLite consensus disorder prediction 132 155 - -
Phco11g01900 529 Gene3D - 54 133 IPR012677 -
Phco11g01900 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 130 IPR000504 GO:0003723
Phco11g01900 529 SUPERFAMILY RNA-binding domain, RBD 42 153 IPR035979 GO:0003676
Phco11g01900 529 MobiDBLite consensus disorder prediction 134 149 - -
Phco11g01900 529 FunFam Heterogeneous nuclear ribonucleoprotein 1 53 135 - -
Phco11g01900 529 Gene3D - 134 243 IPR012677 -
Phco11g01900 529 FunFam Heterogeneous nuclear ribonucleoprotein 1 153 240 - -
Phco11g01900 529 SUPERFAMILY RNA-binding domain, RBD 155 243 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01900 Phco-Chr11 15359714 15362993 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01900 11 15359714 15362993 Phco11g01900 11 15359714 15362993 ECH
Phco11g01900 11 15359714 15362993 Phco3g00189 3 1369162 1372989 PCT