Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00180 ATGGATATTTCTCACTATACAAGGATTGTCTTTGATAAAATTCATAAATTTGAGCCAGAGCATGCAAGAAAGATAATTGGCTATCTCCTCCTACAAGACCATGGAGAACTAGAAATGGCAAAATTGGCTTCTTTCCCTGACTATTTCATCCGTGAAGTGGCATTTCAGGCCAAAAGGGAGCTCCTAAGATTGTCTGCGAAACCAGATATGCTCCCAATTTCACATATTATCAACCCTCAACAATGTTTAAGCCATTTAGCAGCAATGTCCCCTAGAACTCTTACTTCACCAAGCTTTCATGTTTCCCCTCTCTATTGGGATCCACAACCTGCTGGCAATATCAATGCAGACTTTATGGCAATGAATTACATGGATTCTATCATGGAACTTCAGAAGCAGACACAATTGTGCAGTTTGGAGAATCGTATAGATGCTGTAAAGACTGGCACTGTAGGGGTTGCCAACGATTACTATAGAGATGCTTCTGCTGCCAATTTGGGTGGAAAAGCTAGGAGAAGGTTTTCTGAATTTCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAGCATGGAACAAGCTGCAGATTCTATCATGGGCAAGTTGCTCCTGAGAATTTATCTCAGATGTATGGAAATGATGGTATCGGTGAGGATCAGGTGATTTCCCCAGGGTCACTAGCACAGCTAGAATCAGAAATTATTGAGCTTCTGAGATCAAGGGGCAGTCCAATATCCATTGCTTCTCTGCCAATGGCATACTATGATAAATATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACACGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAATAGTATTCTGCTCATAGGCAGTTACAGACCTCATGGGCAGCATTCAGTGTTTCTGGCAGAAGATGCTCCCACACAAATGCAGGAAGGAGAGTTTGCTCGAAATATCAGTGCTTCACGACAAATATATCTGACATTCCCGGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGGCCTGTTGCGGATGTTAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAACTGTTTTGGACAAGGGGAATCCCCATTCTGTTCAGGGTTCTCGGGTTCTTGTGAAGCCTTACCGGGAGAAAGCAAAGATTAATGAAAGGAATAGAAATGAGCACACTGTTTGTTATTCACCACACTGCATAGATACGGACTCTGAACTTAACTCAATTCCTAGAAGTTTTGGGAATCATAGATCCTTTAGGAGGCAACTAATTGAAGAGCAAGACCAAGAGCAGACACTGGAACATGAGAGGAGAAGTTTTGCACAACTGCAGTATTCAAGACCTTTATCCAGCTCACCTCGTTTTGGCTTCTCTTTGGATGAGACAAAAATTTCAGATGATCACTTCAATTTCCATCCACTAGAAGAATCTTTCAATGGTAAATCCATACATACAGACGACAATTTCTCTGATGAGGAAAGCTATGAAGGACTCAACCTCCCAGACAGTCCATTTGCGTTTCCAATAGATAGTGAGATGTAA 1620 0.4142 MDISHYTRIVFDKIHKFEPEHARKIIGYLLLQDHGELEMAKLASFPDYFIREVAFQAKRELLRLSAKPDMLPISHIINPQQCLSHLAAMSPRTLTSPSFHVSPLYWDPQPAGNINADFMAMNYMDSIMELQKQTQLCSLENRIDAVKTGTVGVANDYYRDASAANLGGKARRRFSEFPMKVCHYFNKGFCKHGTSCRFYHGQVAPENLSQMYGNDGIGEDQVISPGSLAQLESEIIELLRSRGSPISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSILLIGSYRPHGQHSVFLAEDAPTQMQEGEFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLDKGNPHSVQGSRVLVKPYREKAKINERNRNEHTVCYSPHCIDTDSELNSIPRSFGNHRSFRRQLIEEQDQEQTLEHERRSFAQLQYSRPLSSSPRFGFSLDETKISDDHFNFHPLEESFNGKSIHTDDNFSDEESYEGLNLPDSPFAFPIDSEM 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00180 539 SUPERFAMILY CCCH zinc finger 178 201 IPR036855 GO:0046872
Phco3g00180 539 ProSiteProfiles OST-type HTH domain profile. 227 311 IPR025605 -
Phco3g00180 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 396 IPR000504 GO:0003723
Phco3g00180 539 MobiDBLite consensus disorder prediction 508 529 - -
Phco3g00180 539 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 337 408 - -
Phco3g00180 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 405 IPR000504 GO:0003723
Phco3g00180 539 CDD RRM_AtC3H46_like 332 401 IPR034365 -
Phco3g00180 539 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 535 - -
Phco3g00180 539 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 202 IPR000571 GO:0046872
Phco3g00180 539 SUPERFAMILY RNA-binding domain, RBD 340 413 IPR035979 GO:0003676
Phco3g00180 539 Gene3D - 330 410 IPR012677 -
Phco3g00180 539 ProSiteProfiles Zinc finger C3H1-type profile. 176 203 IPR000571 GO:0046872
Phco3g00180 539 Gene3D - 174 233 - -
Phco3g00180 539 SMART rrm1_1 331 401 IPR000504 GO:0003723
Phco3g00180 539 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Phco3g00180 539 Pfam OST-HTH/LOTUS domain 227 306 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00180 Phco-Chr3 1312489 1316301 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00180 3 1312489 1316301 Phco3g00180 3 1312489 1316301 ECH
Phco11g01895 11 15263998 15267443 Phco3g00180 3 1312489 1316301 PCT