Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01895 ATGAGTATGAACCTTGCCACATTTTTAACTGTTGATTACTTTTCTATGCTTTCTTTTCTTTTGGGGGAGGGGTTGTTTGTTGATCGGATGAGGATTCTCTGGGATGAAAGACAGGAGAATCTCAACCTTAGTTTTATTTTTTATCTCTTGGTGGATACAATTTTTGTGCTTTTGGGGGCATTTGATTATTTCTCACCATATGTTGCTGCTTTTGATGGGTACAGCTTTTGTGCTTTTTGGGGCAATGGATTACTTCTCACTGTTCATTCCCAAATTAGGAAACAACGACTTAAAGCTATGGATATTTCAGAGTACACAGGTATAGTTTTAGGTAAACTTCAGAGATTTGAGCCTGAGAACGCTTCAAAGATCTTAGGGTATCTCCTTGTCCAAGAGCATGGTGAACAAGACATGGCGAAATTGGCTTCATTCCCTGACGATTTAATTCGTGACTTGGCGTTCCAGACCAGAACCAAGCTTCAAAGATCAGCTGCTAGATCAACCATTCTTCCAATTTCACTTCCAATGAACTGTCAACCAGGTTTTGGCCATTTGTCAGTAATCTCCCCTACTTCAGTAATCACACCTGGGACCCCTACTACAACAGCAGGCTTCCAGGTTCAATCTCCCTTCTGGGATCCTCAGCCTGCTAACAATACCAATGCAGAATATATGACATTGGGTTATTTAGATTCTATCTCTGAACTTCAAAAGCAAACCCCATTCTTCAGTCTAGAGAATCACATGGATGCTATAAATTCTCGGGCTGTTGGGACTTCCGGCACTCCTGGAATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTGGTACTTTGTGTGGAAAAGTTGGCACTCCTGGGATTGCTAATGATCACTATGGCTTAGATGCTTCATCAGCTGGTAATTTGGGTGGAAAAGTTGGTAGAAGGTTTGACCATCCAGTCAAGATCTGTCACTACTTCAACAAAGGATTTTGTAAGCATGGAAATAGCTGTCGATACTATCATGGACTAGGGGCCCCTGATGTGTTCTCTCACATGCATGGAAATGATAGTTTTAATGATGATCAGATGATTTCACCTGGGTCACTGGCACAACTAGAGTCAGAAATTGTTGAACTCCTGAAACTGAAAAAAGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTTTGACAAGTATAAGAAGGTGCTGCAGGCAGATGGCTACCTCACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTCTGACAAAGCTTCTTGCGCGGTTGAAAAATAGCATTCGGCTAATTGACAGGCCTCACGGGCAGCATTCGGTTGTTCTGGCGGAAGATGCTCCGAAGTTCAATGGGAAGGGAGATTATGCTAGAGACATCAGTGCATCACGACAAATATACCTGACATTTCCGGCTGACAGCACTTTTAGCGAGATTGATGTTTCAAACTACTTTGGCACTTTTGGGAACGTTGAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGATACTGTTAAAGCAATTTTGGATAAGGGAAATCCTCATTATGTCTGTGAATCACGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGAAAGCACTCAGATAGAATTGAGCACCCGCACCCTGCTTGTTACTCAGCAGCACACTACGTAGATGTTGACACTGAACCTACGTCAATTCCAAGAGGTTGCAGGAACCCTCGATTTCTGAGGAGGCTGATCATTGAACAGCAAGAGGATGCTGCCCTTGAATTTCAGAGAAGACGTTTTGCAGAGCTGCAACTGGCCCAAAAGTCTTTTACCACTTCACCCCATTTAGGCTTTACCACGGACAGATCAAAAGTTTCAGATGATCATTTCAATGTCCATTCTACCCAATCTCACAATCATGTTCTGAATGACAAAGCCGGATATATGGATAACAATTACACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGAAATGTAG 2067 0.4238 MSMNLATFLTVDYFSMLSFLLGEGLFVDRMRILWDERQENLNLSFIFYLLVDTIFVLLGAFDYFSPYVAAFDGYSFCAFWGNGLLLTVHSQIRKQRLKAMDISEYTGIVLGKLQRFEPENASKILGYLLVQEHGEQDMAKLASFPDDLIRDLAFQTRTKLQRSAARSTILPISLPMNCQPGFGHLSVISPTSVITPGTPTTTAGFQVQSPFWDPQPANNTNAEYMTLGYLDSISELQKQTPFFSLENHMDAINSRAVGTSGTPGIANDYYGLDASSAGTLCGKVGTPGIANDHYGLDASSAGNLGGKVGRRFDHPVKICHYFNKGFCKHGNSCRYYHGLGAPDVFSHMHGNDSFNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKGDYARDISASRQIYLTFPADSTFSEIDVSNYFGTFGNVEDVRIPSQERRMFGFVTFDDPDTVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRIEHPHPACYSAAHYVDVDTEPTSIPRGCRNPRFLRRLIIEQQEDAALEFQRRRFAELQLAQKSFTTSPHLGFTTDRSKVSDDHFNVHSTQSHNHVLNDKAGYMDNNYTDEDSNQGLNLPDSPFSFPVDSGISAEM 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01895 688 ProSiteProfiles OST-type HTH domain profile. 364 447 IPR025605 -
Phco11g01895 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 542 IPR000504 GO:0003723
Phco11g01895 688 MobiDBLite consensus disorder prediction 655 688 - -
Phco11g01895 688 SMART rrm1_1 467 537 IPR000504 GO:0003723
Phco11g01895 688 CDD RRM_AtC3H46_like 468 537 IPR034365 -
Phco11g01895 688 ProSiteProfiles Zinc finger C3H1-type profile. 313 340 IPR000571 GO:0046872
Phco11g01895 688 MobiDBLite consensus disorder prediction 659 673 - -
Phco11g01895 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 479 525 IPR000504 GO:0003723
Phco11g01895 688 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 100 680 - -
Phco11g01895 688 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 473 544 - -
Phco11g01895 688 Gene3D - 312 369 - -
Phco11g01895 688 Pfam OST-HTH/LOTUS domain 364 443 IPR025605 -
Phco11g01895 688 SUPERFAMILY RNA-binding domain, RBD 478 558 IPR035979 GO:0003676
Phco11g01895 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 338 IPR000571 GO:0046872
Phco11g01895 688 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Phco11g01895 688 Gene3D - 471 544 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01895 Phco-Chr11 15263998 15267443 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01895 11 15263998 15267443 Phco11g01895 11 15263998 15267443 ECH
Phco11g01895 11 15263998 15267443 Phco3g00180 3 1312489 1316301 PCT