Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00143 ATGCGTAGAGAGAGAGAGAGAGAGAGAATGAGAGAAGAAGGTGTGAGAGAAGATGTTAGTTTGTTTGAGACTAAGGAAGGAAGATTCCGAGGAGTGTACAAGGTTTTTGCATCAACAATATTTGCTGCTATTTGTTTGATCTGGGTTTACAGAGTGATAAACATGGAGAGAGTTGGAAGAGGAAGAAGATGGGCATGGATGAGTGTTATGGTCTCAGAGTTTGTGTTTGGATTCTACTGGATCATCACTCAGTCTGTTCGTTGGAGAATACTCTATCAAACACCTTTCAAACACAAACTCTTACACAGATACGATGAGGAGAATTTACCAGCAGTGGACATTTTTGTATGCACGGCTGATCCAAAACTGGAGCCTCCATGCATGGTGATGAACACGGTGTTATCAGCAATGGCATACAATTATCCTGCAAATAGATTGAACGTGTATCTCTCTGACGATGGAGGCTCTGAGTTAACATTCTATGCTCTCTTAAAGGCCTCCATTTTCTCCAAACACTGGTTACCCTTTTGTAGAAGATTCAACGTTGAACCAAGGTCCCCAGAGGTGTTCTTTTCTCATGCTCAAAGTTGCAGCACTACCACTGAGTATGACAAAGCATGCTTGCATATCAAGAAACTGTACGAAGAAATGAAAAGTGAAATTGAATCAGCTGCAGCAAGGGGAGAGGTTCCAGAGAATGTGAGGAATGAACACAGAGGATTCTCGGAATGGAATCCAAAAACCACAAAACAGGATCACCCGTCGATCGTGCAGATTATAGTTGATGGAAGGAAGAGAAATGATGCAGATTTTGATGGATTTGAAGTTCCAACAGTGGTATACATGGCACGCGAGAAACGACCCAACCATCCTCATCACTTCAAAGCTGGAGCTGTTAATCCACTGATAAGAGTATCATCAGAAATAAGCAACGCCCCTTTCATCCTCAACTTGGACTGTGACATGTACTCCAATAATGCAGATACAATTCAAGAAATACTGTGTTTTTTCCTCGATGAAACAAAAGGACAAGATATAGCTTATGTACAATTTCCACAATGCTATAATAACATCACCAAAAATGACCAATATGGAAATTCTTACTTTGTAAGCTCTAAGTTTGAGTTAGCTGGCATAAGCGGATATGGAGCAGCCTTGTTCTGTGGAACAGGATGCTTACATCGAAGAGAAAGTCTTTCAGGATCTTACGCAAGAGATTGCAGAGTAAAACGGGAGATCAAGCCTAAAAGAAACGATAGCAGAACAATTGATGAAGTGAATGAAGCATCCAAGGCTTTAGCCACTTGCACCTACGAAGAGGGCACCCAATGGGGGAAGGAGATGGGATTAGTATATGGTATTCCTGTAGAAGACATTGCAACAGGCCTTGTAATCTCGTGCAGGGGTTGGAAATCTATTTATTACAACCCAGAAAGGAAGGCATTTGTCGGCATTGCTCCAACAACCTTGGATGTGAACTGTCTTCAGCACATGAGGTGGTCGGAAGGCATGTTCCAAGTTTTCCTCTCCAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATAAACTGGGGTGTACAAATGGGATATTGCAATTACCTCTTGTGGGCTCCTATGTCGCTGCCCACTCTTTGTTATGCCATTGTTCTTCCAGTTTCCTTGTTTCATGGCATTCCGTTGTTCCCAAAGCTTTCAAGCATGTGGGTCCTTCCATTTGCGTATGCTTTTCTTGCTACCTATGGCTATAGCTTGTGTGAGTATTTGAACTGTGGATCCACGACAAAAGGTTGGTGGAATTTGCAAAGAATAAAGTTCATCCACAGAATCACCTCTTATCTCTTTGGTTTCATCGATACTATGACCAAGCAAATAGGATTGTCACAGACAAACTTTGTCATCACAGATAAAGTGGTAACTGACGATGTTCGAAAGAGATACGAGCAAGAAATCATTGATTTTGGAGGCTCCTCGATCATGTTGACCTTATTAGCAACAGTGGCTATGCTAAACCTTTTTGGTGTCGTTGGAGGAATCAAGAGGGTTCTCATGGAATTGGAATTCGGCTGGAGCCAATTGATGGTGCAGATTACACTGAGTTTATTGGTGGTGATGATCAATTTACCTGTATATGAAGCACTTTTCATTCGTAGTGATAAAGGCAGCATATCATCCTCGATCATGTTGAAGTCCATTGTCGTGGCTTCATTAGCATGTTACTTAGCATCTTTCATTTGCTAG 2238 0.4182 MRRERERERMREEGVREDVSLFETKEGRFRGVYKVFASTIFAAICLIWVYRVINMERVGRGRRWAWMSVMVSEFVFGFYWIITQSVRWRILYQTPFKHKLLHRYDEENLPAVDIFVCTADPKLEPPCMVMNTVLSAMAYNYPANRLNVYLSDDGGSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEVFFSHAQSCSTTTEYDKACLHIKKLYEEMKSEIESAAARGEVPENVRNEHRGFSEWNPKTTKQDHPSIVQIIVDGRKRNDADFDGFEVPTVVYMAREKRPNHPHHFKAGAVNPLIRVSSEISNAPFILNLDCDMYSNNADTIQEILCFFLDETKGQDIAYVQFPQCYNNITKNDQYGNSYFVSSKFELAGISGYGAALFCGTGCLHRRESLSGSYARDCRVKREIKPKRNDSRTIDEVNEASKALATCTYEEGTQWGKEMGLVYGIPVEDIATGLVISCRGWKSIYYNPERKAFVGIAPTTLDVNCLQHMRWSEGMFQVFLSKYCPFIYGHGKINWGVQMGYCNYLLWAPMSLPTLCYAIVLPVSLFHGIPLFPKLSSMWVLPFAYAFLATYGYSLCEYLNCGSTTKGWWNLQRIKFIHRITSYLFGFIDTMTKQIGLSQTNFVITDKVVTDDVRKRYEQEIIDFGGSSIMLTLLATVAMLNLFGVVGGIKRVLMELEFGWSQLMVQITLSLLVVMINLPVYEALFIRSDKGSISSSIMLKSIVVASLACYLASFIC 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00143 745 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 101 192 IPR029044 -
Phco3g00143 745 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 245 406 IPR029044 -
Phco3g00143 745 SUPERFAMILY Nucleotide-diphospho-sugar transferases 127 512 IPR029044 -
Phco3g00143 745 FunFam Cellulose synthase isolog 101 199 - -
Phco3g00143 745 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 28 732 - -
Phco3g00143 745 Pfam Cellulose synthase 422 738 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco3g00143 745 Pfam Cellulose synthase 112 405 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00143 Phco-Chr3 945735 950214 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01843 11 14788666 14792999 Phco3g00143 3 945735 950214 PCT
Phco3g00143 3 945735 950214 Phco11g01844 11 14795394 14800461 PCT