Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00140 ATGTGTACCCAGGAAGTTATCAAGCAGTTGGAGTCCCTTATGGAAACCTTGGATGAGAAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGTGCGGTTTCTCAAAGCAAGGGACGGGAATGTTGTCAAAGCACATAAAATGTTGATTGATTGTTTACAATGGAGACTAGAAAATGACATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTGTACAGAAGTTTGCGAGATTCTCAACTTGTGGGAATGTCTGGTTTCACAAAGGAGGGCCTACCTGTCATTGTTATTGGTGTTGGGCTTAGCACATTTGATGAAGTGTTTGACAAATACTATGTACAGTTGCACATCCAAATGAATGAATATAGGGATCGAGTGACCATGCCAAGAGCTACAAAGAATCATGGACGACACATTGACACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCGCTGAACCAATTGAAGCTTTTGACTGCTATAACTACAATAGATGACTTGAACTATCCAGAAAAGACTGACGCGTATTACATAGTTAACGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAGTCCATGTACTCAAAGGTTGTGGCACGGAAGAATTACTGAAGGTAATGGACTATGCATCCCTTCCACATTTTTGCAGAAAGGAGGATTCCAGGGTGTCCCGACATCATGCAGCTGGAAATACTGAAAATTGTTTCTCCTTTGATCATGTCTTCCATAAACAACTATATAATTACATCGAGCAGCAGGCTATGTTCATAGAGTCCATATCCCAGGATTCTTTCCATGTAGATTTACCGGAGCCAGACCTAGTTGATGCCAAAATTGCCAAGACTATAGAAACCGAGTTCCACAAACTGGAAATTCAGAATGGCCTCACCAACTGA 966 0.4099 MCTQEVIKQLESLMETLDEKQKNTFQNMHQGYPTETLVRFLKARDGNVVKAHKMLIDCLQWRLENDIDNVLAKPIPPGLYRSLRDSQLVGMSGFTKEGLPVIVIGVGLSTFDEVFDKYYVQLHIQMNEYRDRVTMPRATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVKPLLQERTRKKVHVLKGCGTEELLKVMDYASLPHFCRKEDSRVSRHHAAGNTENCFSFDHVFHKQLYNYIEQQAMFIESISQDSFHVDLPEPDLVDAKIAKTIETEFHKLEIQNGLTN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00140 321 Coils Coil 3 27 - -
Phco3g00140 321 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 76 236 IPR001251 -
Phco3g00140 321 CDD SEC14 88 238 IPR001251 -
Phco3g00140 321 SMART CRAL_TRIO_N_2 33 58 IPR011074 -
Phco3g00140 321 SMART sec14_4 83 244 IPR001251 -
Phco3g00140 321 Gene3D - 2 263 IPR036865 -
Phco3g00140 321 Pfam CRAL/TRIO, N-terminal domain 8 57 IPR011074 -
Phco3g00140 321 SUPERFAMILY CRAL/TRIO domain 80 238 IPR036865 -
Phco3g00140 321 SUPERFAMILY CRAL/TRIO N-terminal domain 14 73 IPR036273 -
Phco3g00140 321 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 3 320 - -
Phco3g00140 321 Pfam CRAL/TRIO domain 87 238 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00140 Phco-Chr3 929407 932552 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00140 3 929407 932552 Phco3g00140 3 929407 932552 ECH
Phco11g01838 11 14749464 14754338 Phco3g00140 3 929407 932552 PCT