Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02934 ATGGAGGGGTTGGATAGGTTTCTTGTGGCAACAAGCACCGTAGGCTTCATTTGTGTGTGCAAAGCCCTTGTTCATTTTCTCAAGTGGGTGTGGGTGATGTTCTTGAGGCCACCAAAGAACCTCAAAGAATATGGTTCATGGGCTATAATCACTGGATCCACTGATGGAATTGGAAAGGCCATGGCCTTTGAATTGGCATCCAAGGGACTCAACCTTGTCTTGGTTGGTCGAAACCCTCTGAAACTTGAAGCAACATTGAAGGGAATAAGAGAGAGACATGGTGTTGAGGTGAAGTTTGTGGTCATAGATTTGCAGAAAGTTTGTGGAGAGGAAATAGCTAAGAGAATAGAGGAAGCAATAGAGGGTTTGGATGTAGGTTTGCTTGTTAATGGTGCCGGCTTGGCTTACCCTTTTGCAAGATTCTTTCATGAGGTTGATTTGGAGCTTATGGATGCCATTGTGAAAGTGAATGTGGAGGCAACAACTTGGATCACCAAGGCTGTGATTCCATCCATGATCAAGAAGAAAAAGGGTGCAATAGTGAACATCGGTTCTGGTTCCACTGTGGTGCTTCCTTCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGGGTACCTTGCCATGTTCTCCAGATGCATCAGTTTGGAATATAAGCATCAAGGAATTGATATCCAATGTCAGGTTCCATTATTTGTGTCAACAAAGATGACCAAAATGAAGAGATCAGTTTTTGTGCCAACACCAGAATTGTATAGCAAAACATGCACAAGGTGGATTGGCTACGAAAATCTGGTTGAACCATATTTTCTCCATTCTGTGCAAGGGTTTCTCATAAGGGCAATTCCTCATGCACTTATGGATTCCTACATGTTACGCTATTTTCTTTATTTTCGCGCAAGAGGACTCTCCAAGGACTCCAACAACACTAAAAAAACATTATTAGCTGCATCTGATTCTGAAGAACCAAACATCATAAATCAAGATTCTAGTACAGATTACTGA 1005 0.4209 MEGLDRFLVATSTVGFICVCKALVHFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNLVLVGRNPLKLEATLKGIRERHGVEVKFVVIDLQKVCGEEIAKRIEEAIEGLDVGLLVNGAGLAYPFARFFHEVDLELMDAIVKVNVEATTWITKAVIPSMIKKKKGAIVNIGSGSTVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKRSVFVPTPELYSKTCTRWIGYENLVEPYFLHSVQGFLIRAIPHALMDSYMLRYFLYFRARGLSKDSNNTKKTLLAASDSEEPNIINQDSSTDY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02934 334 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Phco2g02934 334 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Phco2g02934 334 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Phco2g02934 334 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Phco2g02934 334 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Phco2g02934 334 Pfam short chain dehydrogenase 47 242 IPR002347 -
Phco2g02934 334 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 267 - -
Phco2g02934 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 298 IPR036291 -
Phco2g02934 334 Gene3D - 41 263 - -
Phco2g02934 334 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Phco2g02934 334 PANTHER RH59310P 8 309 - -
Phco2g02934 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Phco2g02934 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Phco2g02934 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Phco2g02934 334 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Phco2g02934 334 PIRSF 11-beta-HSD1 3 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02934 Phco-Chr2 58296003 58313398 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02934 2 58296003 58313398 Phco2g02934 2 58296003 58313398 ECH
Phco4g02828 4 49628499 49631189 Phco2g02934 2 58296003 58313398 PCT