Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02789 ATGCTCGTATTCCACAAAGTTCTCCTCCGCTACTCGCCACCGCCGCCGCTGCGTTTACTGACTTCAATTCCTACACCGTGGAACCAGATCACGATGTCGAACCCAGATACACGGTCATTCACTTGGCACTACACAGAACTCGATGACAGGGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTTATCTACACGCGCTGGGTTTGCCGCTTCCAGGGGCGCCTTCCCACCACAGTTTTTTCCGCCGCTGCCCACGCGCCGCCACTCCTGCCATCGCAGGGACTGGACCCCGCAACCCTTAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGTAAGTGCGTGGGACGAAACTGAGTGTAGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAATTGAAGGTTTTGCCGGCGTGCGACCATTATTTCCATTGTGAATGTGTTGATAGGTGGCTCACTCTCCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTTAAGGTTGAATCTTCTTTCCCAAAGATTTTGATTCAGGAACCACCCCTAAGAATTGATTTCCAGTTCTAG 618 0.5291 MLVFHKVLLRYSPPPPLRLLTSIPTPWNQITMSNPDTRSFTWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRFQGRLPTTVFSAAAHAPPLLPSQGLDPATLKKLPIILHHAPSDRDVSAWDETECSICLGEFRDGEKLKVLPACDHYFHCECVDRWLTLHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02789 205 SUPERFAMILY RING/U-box 129 186 - -
Phco2g02789 205 SMART ring_2 138 179 IPR001841 -
Phco2g02789 205 CDD RING-H2_EL5-like 137 180 - -
Phco2g02789 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Phco2g02789 205 FunFam RING-H2 finger protein ATL66 101 185 - -
Phco2g02789 205 Pfam Ring finger domain 137 180 IPR001841 -
Phco2g02789 205 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Phco2g02789 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 57 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02789 Phco-Chr2 57325314 57326569 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02789 2 57325314 57326569 Phco3g00758 3 6283061 6283564 PCT