Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02704 ATGGCGGAATTGGAGGAGGACCGGATGGGGGATTTCAAGCCCTTCTCGGAGGGCTCTTCGTGCTCACGTTCGATCAGCGAAACTGTGAATGGCTCTCATCAATTCACGATAAAGGGGTACTCTCTTGCAAAGGGGATGGGTGCTGGGAAGTACATCATGAGCGACACTTTTAGCGTTGGTGGTTACGATTGGGCAATTTACTTCTACCCTGATGGGAAGAACCCCGAGGACAATTCCATGTACGTTTCGGTCTTCATAGCTCTCGCTAGCGACGGAACCGATGTTAGGGCTCTGTTCAAGTTGACGCTTGTGGATCAGAGTGAGAAGGGAAACGATAAGGTTCATAGCCATTTCGATAGGCCTCTTGACGGTGGACCGTACACCTTGAAGTATAGAGGCAGCATGTGGGGTTACAAGCGTTTCTTCAGAAGAAATTTACTTGAATCTTCAGAGTATCTAAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGCGTTGTCAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTACTGTGCCACAGTCAGACATGGGCCGAAATTTTAAGGACTTGCTGGACTCAGAGGTTGGGTGCGACATAGTTTTCAAGGTTAAAAGCGAAAGCTTCAAAGCGCATAAGTTAATACTTGCGGCAAGATCTCCTGTGTTTAGAGCACAGTTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATTGATCCTTTTATCTTCAAGGCAATGCTTCTCTTCATTTATTCTGACAAACTTCCTGACATCTATGAAGTTATGGACTCAATGAATGTCTGCTCATATGCCGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGATCGGCTCAAACTGCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTAGCCACGATGCTTGCCCTGGCAGAGCAACACCACTGTCCACAGCTTAAGGCAATCTGTTTAAAATTTATTGCCAATCCAGCAAATTTGGGAGCTGTAATGCAGTCGGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCGCAATGTTGTTGGAACTGCTGGAGACATTTGCTTCAGTGGACGATAACTCAAGCCTGACATTGAGCAGAAAGAGAAGTGGCAGTAGCATATATGGTCAAGATTTGGCAGACGGGGCAGCTGCTGAATCAGTTAATCCAAATGGCAGGCGAGATTTGGAGTGA 1239 0.4568 MAELEEDRMGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLDGGPYTLKYRGSMWGYKRFFRRNLLESSEYLKDDCLVMHCTVGVVKTRFEGSKQGVTVPQSDMGRNFKDLLDSEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIDPFIFKAMLLFIYSDKLPDIYEVMDSMNVCSYAVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATMLALAEQHHCPQLKAICLKFIANPANLGAVMQSEAFVHLKESCPAMLLELLETFASVDDNSSLTLSRKRSGSSIYGQDLADGAAAESVNPNGRRDLE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02704 412 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Phco2g02704 412 FunFam BTB-POZ and math domain 1 175 302 - -
Phco2g02704 412 SUPERFAMILY POZ domain 178 306 IPR011333 -
Phco2g02704 412 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Phco2g02704 412 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Phco2g02704 412 Gene3D - 307 388 - -
Phco2g02704 412 SUPERFAMILY TRAF domain-like 27 166 - -
Phco2g02704 412 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Phco2g02704 412 CDD BACK_AtBPM-like 305 368 IPR034090 -
Phco2g02704 412 CDD BTB_POZ_BPM_plant 185 305 - -
Phco2g02704 412 CDD MATH 31 164 IPR002083 GO:0005515
Phco2g02704 412 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 364 IPR045005 GO:0016567
Phco2g02704 412 SMART BTB_4 199 308 IPR000210 GO:0005515
Phco2g02704 412 SMART math_3 35 147 IPR002083 GO:0005515
Phco2g02704 412 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g02704 412 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02704 Phco-Chr2 56613970 56620638 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02296 2 53530868 53536987 Phco2g02704 2 56613970 56620638 ECH
Phco2g02704 2 56613970 56620638 Phco2g02704 2 56613970 56620638 ECH