Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02296 ATGCTTTTCACCATCGTTCTTTGTTCCCCGGTGTTCGCGTATCGACTTCAATCCATAGCCGCTTTGGTCTCTCCTCTTTCGGAGCACACGCCAGTTTCAGAAGCGATTCCATACTCGCTACTTTTTGACCAAAGGATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTACGATGAGGAGGTTGAAACCGCGGCGGGTGAATCTGCTAGTCAAGCAGTGACGAGCAGGTACCTGCAGGAAAATGCTAGTGATAGTGATGATTCTGATGGGCAAAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCGTCCACTGTTGACCAGATGAAGAATGCTATGAAGATTAATGATTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAGGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACACCATGAAGCAGAAGCTGAAGAAAAATAATAAGCAGTACGAGGAGTTGATTAACAAGTGTAGGGAGAATCCTGAGAGTGATGAAGAGAAGGAAGAAGACGAGAGTGAGGAAGAGTATGAGAGCGATGATGAAATTATTGAGCTAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCTGAAGCCTCTCAGTATGATGATGAAAAGCCTGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATCGACAATTTATGAAAGACCCTAGTGAAATCACATGGGACACGGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCAGGGCTCAATGGGCATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGTCCATTCTTGATATTCTAGTGCAGCATCCAAACATATTGGTTGACGATTCGGTTGAGCCAGATGAGAACGAAACTCAGAAAGGGATTGACTATAATGGACCAATTCGGGTCTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCCTCTAAGGTGTCCTTGAGGAGAGTTGAACTCATTTACTACAAACCGCAGGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGGATGGAGATGTTCAAGGGGAGGCAAGTGAGGAGTCAAAAGGATTTGAAGAATCAAGAATTCCTACTGCATTTATTGCGACCCCAGAGGTTGTGGCCCGGAAGCCCACATTCCCTGATAATAGCAGGACTATAATGGATGAATTGGTATCATTGATATACAAGTACGGAGATGAGCGAACTAAAGCACGAGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATTGCCCGTGATCTGCTTCTTATGAGTCATTTGCAAGATAGTGTTCAACATATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCACATGGTTGCCTGTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTGTCACAAAGCCGCTATCACGAGAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGAAGGCAAATGCCATACCATATGCACATCAATCTCGAGCTCCTGGAGTTAGTACATCTGGTATCTGCCATGCTGCTGGAAATTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATATCTAAGAATTTCCGTCGCTTGCTTGAGCTAAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCATAAAGGGAGACTACCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAAAAATCGAGATGCTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTAAGGACATACCTCTTCACCTTCTCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTACAAAAATTTTTGATCTCTCTGTTTCTTCTACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAGAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCACTGCCGCTGCAGGTGGTAGATGGCTAGACCAGTCCCTTTCTCAGCCACGGCAAAGCAGTGGACGTGCTGGATATGGTAGTGGAAGGCCAATGGCTTTAGGTCAAGCAGCCATGGGTTCCAGGGATCGAACAGGGCGGGGAACAGGTGGTGGCTATCAGAGTGGACGATATCATGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCGTTAAGGGGACCCCATGGCGATACATCCACACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2928 0.4518 MLFTIVLCSPVFAYRLQSIAALVSPLSEHTPVSEAIPYSLLFDQRMASRFWTQGGSDSEEEESDYDEEVETAAGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEELINKCRENPESDEEKEEDESEEEYESDDEIIELEQLRKPEAKSDSEASQYDDEKPDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLSILDILVQHPNILVDDSVEPDENETQKGIDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVSLRRVELIYYKPQEVYDAMKKLTELTEDGDVQGEASEESKGFEESRIPTAFIATPEVVARKPTFPDNSRTIMDELVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLELVHLVSAMLLEIPNMAANVHDAKRKVISKNFRRLLELSEKQTFTGPPENVRDHVMAATRFLIKGDYQKAFDIIVSLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKIFDLSVSSTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYATAAAGGRWLDQSLSQPRQSSGRAGYGSGRPMALGQAAMGSRDRTGRGTGGGYQSGRYHDGGYGRSAQGGSALRGPHGDTSTRMVSLKGVRA 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02296 975 Coils Coil 189 216 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 57 71 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 52 80 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 893 975 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 220 238 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 239 274 - -
Phco2g02296 975 ProSiteProfiles PCI domain profile. 665 837 IPR000717 -
Phco2g02296 975 Gene3D - 772 840 IPR036388 -
Phco2g02296 975 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 46 970 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco2g02296 975 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 766 854 IPR000717 -
Phco2g02296 975 MobiDBLite consensus disorder prediction 180 199 - -
Phco2g02296 975 SUPERFAMILY "Winged helix" DNA-binding domain 761 836 IPR036390 -
Phco2g02296 975 MobiDBLite consensus disorder prediction 200 219 - -
Phco2g02296 975 MobiDBLite consensus disorder prediction 178 274 - -
Phco2g02296 975 Pfam PCI domain 705 833 IPR000717 -
Phco2g02296 975 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 47 934 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco2g02296 975 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 88 697 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02296 Phco-Chr2 53530868 53536987 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02296 2 53530868 53536987 Phco2g02704 2 56613970 56620638 ECH
Phco2g02296 2 53530868 53536987 Phco2g02296 2 53530868 53536987 ECH