Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02533 ATGAACTTCACACCCTCCCTTCTACTCTTGACTTTTGCTTTGCTGCTAACCACCATCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGCTGTTAAAGTGAATGGGTTCACCTGCAAAGATGCTTCCAAGGTAAATGCCACTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACCTATGGGTCCTTGGTGACTGGTGCCAATGTTCAGAAAATCCCAGGACTCAACACCCTTGGTGTATCTCTGTCACGAGTTGACTATGCTCCAGGTGGCATCAACCCTCCCCACACTCACCCACGTGCCACCGAGATTGTGTTTGTGCTGGAAGGAACACTCGATGTGGGGTTCATAACCACAGCCAATGTGCTGATATCGAAGACCATCTACAAGGGTGAGATTTTTGTGTTCCCAAAAGGTTTAGTTCACTTCCAAAAGAACAATGCAAAGGAGGCTGCCTCAGTCCTTGCAGCCTTCAACAGTCAATTACCTGGCACACAGTCCATTGCTCTCACCTTGTTTACAGCCACACCACCTGTTCCAGACAACGTCTTGACCCAGGCCTTCCAGGTTAGTACCAAGGAGGTTCAGAAAATCAAGTCCAGGCTTGCACCTAAGAATTAA 657 0.4825 MNFTPSLLLLTFALLLTTITASDPDPLQDLCVADLASAVKVNGFTCKDASKVNATDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTIYKGEIFVFPKGLVHFQKNNAKEAASVLAAFNSQLPGTQSIALTLFTATPPVPDNVLTQAFQVSTKEVQKIKSRLAPKN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02533 218 Pfam Cupin 62 208 IPR006045 -
Phco2g02533 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Phco2g02533 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Phco2g02533 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 212 - -
Phco2g02533 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Phco2g02533 218 SMART Cupin_1_3 59 208 IPR006045 -
Phco2g02533 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Phco2g02533 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Phco2g02533 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Phco2g02533 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Phco2g02533 218 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02533 Phco-Chr2 55241117 55242310 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02533 2 55241117 55242310 Phco6g01348 6 13630901 13632762 PCT