Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02401 ATGACTTTTTCTCTCTTTTCTTCTCTCCTTTTCCTTCTTTCTGCCTTTTCCACCCTTTCTCACTCCCTCACTCCTCTTTCCCACCACCACTCTCACTCTGCCACACACAACTACAGAGATGCTCTCACAAAATCCATCATCTTCTTTGAGGGCCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTCTTTGATGGCTCCGCCATGAATGTTGATTTGGTCGGAGGGTACTACGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCTACTGCTCATCCAGACACCATTTATGTCCAGGTTGGAGATGCCGAGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGAAGTGTTTTCAAAGTAGATAAAAACAACCCTGGTTCAGATGTGGCTGCAGAAACTGCTGCGGCCCTTGCAGCTGCTTCTCTGGCTTTCAAGAAAACTGACCCAGCCTATTCCAAGACTTTGGTTAGGAGGGCTATTCGTGTTTTCCATTTTGCTGATAAATATAGAGGATCCTACAGTAATGGATTGAAGTCCGTTGTGTGCCCTTTCTATTGCTCCTACTCGGGTTATCAGGATGAGCTGTTGTGGGGAGCTGCTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAACTCAATGGACAAACCCTTGGGGCTGCAGATTCTGACAATATCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTGCATGACTACAAGGGGCATGCAGACAATTTTATCTGTTCTGTTATCCCTGGTTCCTCCTCTTCCCGATTCACCCCAGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAATATGTGACTTCAACCTCCTTCATACTCCTAACTTATGCTAAATATTTGACCAAAGCCCATGTGGTTGTGAACTGCGGTGGAACCACAGTGACTCCAAAGAGACTACGGGCTATAGCCAAAAAACAGGTGGATTACTTGTTAGGAGAGAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCACGGTATCCGCGAAGGATACACCACAGGGGCTCATCGCTGCCGTCCATTGGTGTTCACCCTGGCAAGATCCAATGCTCAGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACATTCTAGTGGGTGCCGTTGTTGGAGGACCGGATCTGAATGATGGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAACCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTCGCTCACTCCTTTGGCCAACTCTAG 1500 0.476 MTFSLFSSLLFLLSAFSTLSHSLTPLSHHHSHSATHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSALFDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLAFKKTDPAYSKTLVRRAIRVFHFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKLNGQTLGAADSDNIFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSSRFTPGGLLFKMGDSNMQYVTSTSFILLTYAKYLTKAHVVVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGPRYPRRIHHRGSSLPSIGVHPGKIQCSAGFSVMNSESPNPNILVGAVVGGPDLNDGFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02401 499 SUPERFAMILY Six-hairpin glycosidases 35 497 IPR008928 GO:0005975
Phco2g02401 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Phco2g02401 499 FunFam Endoglucanase 34 497 - -
Phco2g02401 499 Pfam Glycosyl hydrolase family 9 38 488 IPR001701 GO:0004553|GO:0005975
Phco2g02401 499 Gene3D - 34 495 IPR012341 GO:0005975
Phco2g02401 499 PANTHER ENDO-1,4-BETA-GLUCANASE 16 494 - -
Phco2g02401 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02401 Phco-Chr2 54221330 54223488 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02401 2 54221330 54223488 Phco2g02401 2 54221330 54223488 ECH
Phco2g02401 2 54221330 54223488 Phco6g01515 6 16059378 16064624 PCT