Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01934 ATGGAGGAGGCGCTGGAACTGTCACGCGCGAAGGACACGAAGGAGAGGATGGCGGGAGTGGAGCGCCTCCACCAACTTCTCGAAGCTTCCAGAAAGAGCCTCTCGTCTTCCGAGGTGACCTCGCTCGTTGACACTTGTATGGATCTCTTGAAGGACAATAACTTCCGCGTCTCGCAGGGCGCGCTCCAGGCGCTCGCCTCCGCCGCCGTCCTCTCCGGCGACCACTTCAAGCTCCACTTCAACGCACTCCTCCCCGCCGTCGTCGACCGTCTCGGCGACGCCAAGCAGCCCGTCCGAGACGCCGCCAGGCGCCTCTTGCTCACTCTCATGGAGGTTTCTTCTCCAACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTTAGAGAGGAGTTTACACGAACTGTCACAGCTGCAATTAATTTATTTGCATCTACAGAGCTCCCACTTCAACGGGCTATCCTCCCCCCTGTGTTGCATTTGCTTAATGATCCAAATCCTGCTGTTAGAGAAGCTGCTATTTTGTGCATTGAAGAAATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGCCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTTGAAGGAATTCAGCCAAAAGTTCGCTCTTCAGATGGTATTCAAGGTGGGTATATTACTGGGGAAATTAAGCATTTGAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGCTCCTCCAGGGAAACCTCTCTTTTTGGAGGAGAAGGTGACATCACTGAGAAACCCATAGACCCTGTGAAGGTATATTCAGATAAGGAGTTAATCAGGGAAATTGAGAAGATTGCATCTACTCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCCATGCAGAGAGTTGAAGGTCTTGTTATAGGAGGCGCTGCGGATTATCCATGTTTTCGTGGGCTCTTGAAGCAACTTGTTGGACCTTTAAGCGCACAATTGTCAGACCGAAGATCTAGCATTGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGATCTCTTGGGTGATTTTGAAGGATGTGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTACTTGTAATTGCAGAGTCTTCAGATAACTGCATAAAAACGATGTTGCGCAACTGCAAAGTTGCCCGTGTTCTTCCCCGTATAGCTGATAGTGCAAAAAATGATCGAAATGCTGTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTGGAACATTGGCCTGATGCACCAGAAATACATCGATTGGCTGATTTATACGAGGATATGATAAAGTGTTGTGTTAAAGATGCAATGAGTGAGGTTCGATCTACTGCAAGGATGTGCTATAGAATGTTTGCAAAAACTTGGCCAGAGCGATCTCGTCGCCTATTTGCATCCTTTGACCCTGCCATTCAAAGGTTAATAAATGAAGAGGATGGAGGAATACATCGGCGACATGCTTCTCCTTCCATTAGAGATAGAGGTGGACTGACATCCTTGGCTAGTCAAACGTCGGCTCCTTCTAATCTACCTGGTTATGGAACTTCTGCTATAGTTGCGATGGATAGAAGTTCGAGTATATCATCAGGGACATCTATCTCCTCTGGTATACTTCTATCACAAGCTAAGTCACTTGGGAAGGGTACAGAACGCAGTCTGGAAAGCATGTTACATGCAAGCAAGCAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCCGATAAGCATAATTCATCGTTCCGGTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCGGCCGTCTCTGCATCTAATCATCTGACAAGCTCTTTAACAACAGAATCCACTGCTTCTGGCATCAATAAAGGTAGTAACCGAAATGGTGGTCTTGGTTTGTCTGACATAATCACCCAGATTCAAGCTTCAAAAGATTCTGCCAAGTTGTCCTATCATAGCAATGTTGGCATTGAACCTTTATCATCAATATCATCATATTCAAGTAAAAGGGCCTCTGAAAGATTACATGAAAGAAGTTCACTTGATGATAACATTGATATTAGGGAGACTAGGCGATTTATGAAACCCAACCACGATAAGCAGTATTTGGATGCCCCTTATAGAGATGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTCCAGAGACCACTATTGAGAAAGAATGTGGCTGGACGCATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAGCTATCTCTTGGAGAGGTGCCAAATTATGCAGAAGGACCCTCATCGCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGGCCAAAGGGAGTTATAGAAGTTGTTCAGAATTTTGAAAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGACCCCCATCATAAAGTTGCACAAGCTGCTCTTTCAACACTTGCAGATATTGTTCTCGCATGCCGAAAGCCTTTTGAAGGTTACATGGAAAGAATATTACCCCATGTGTTTTCTCGGTTAATTGATCCTAAAGAACTTGTTAGGCAGCCATGTTCAACAACTTTGGAAGTTGTGAGCAAAACTTACAGTATAGATTCTCTTTTACCGGCACTATTACGCTCACTAGATGAACAGAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAATTTGCAATCAATTCCTTTAACAAACATTCTATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTGACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAGTGTATTCTCATTTTGATTCGACTGCTGTTCTTAATTTCATTCTAAGTTTGTCAGTTGAAGAACAAAATTCTTTGAGACGAGCTTTAAAACAATATACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAAAGACAACGTTCTAAGTCTTCCTATGATCCATCTGATGTGGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAGGCTCATTACCTTGGAAGGTATTCTGCTGGATCCCTTGATGGTGATGGTGGAAGGAAATGGAGTTCCCAGGATTCAACACTAGTGAAAGCTAGTCTTGGTCAAGCATCATCTGGTGAAACTCAGGAACATCTGTATCAAAATTTTGAAACTGATCCTAATAGTGGCAGTCTTGCTTCAAAAACTAAAGATCTTGTTTATGCAGTCAATCCAATGGGTCAAAACTTTACCTCTCAAACTAGCCATAGACATGTGGAAAGTAGCATAAGCTTGGAGGGTCTTTCAACTCCTCGTCTTGATGTAAATGGTTTGATGTCACCAGAGCATTTAAATGTTGCCGAAGGCTATGTAAATGACAAGGAATATTCTTCTGAATTGGGACTTAATCATCACACGGACGAAGATGTAAAGATTAACTCCATAACAGAAGCAGGACCCAGCATTCCTCAAATTCTTCATATGGTATGCAGTGGGGGTGATGGAAGCCCTGTTTCAAGTAAACGGACTGCACTTCAACAATTAGTTGATGCTTCTATAACAAATGATCATTCTATTTGGACCAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTACTGGATGATTCAGATTCCTCAGTTAAAGAGCTTGCTCTTTCACTAATAGTTGAAATGCTTAAAAACCAGAAAGGCGCAATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTAACGTTACAAAAGATATCATTCCTAAGGTCTCTAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACGCTTGTCATTTGCATAAATTGCTTAACAAAGCTTGTGGGGCGGCTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTGCCCGCACTTTTTGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGCCTGGTGGATATTTATATAATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAACAATTGATGCCGTTCAAGATTAG 4335 0.4284 MEEALELSRAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLSGDHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSSDGIQGGYITGEIKHLSVNPKKSSPKAKSSSRETSLFGGEGDITEKPIDPVKVYSDKELIREIEKIASTLVPEKDWSIRIAAMQRVEGLVIGGAADYPCFRGLLKQLVGPLSAQLSDRRSSIVKQACHLLCFLSKDLLGDFEGCAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKVARVLPRIADSAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRLADLYEDMIKCCVKDAMSEVRSTARMCYRMFAKTWPERSRRLFASFDPAIQRLINEEDGGIHRRHASPSIRDRGGLTSLASQTSAPSNLPGYGTSAIVAMDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVSAIESMLRGLDLSDKHNSSFRSSSLDLGVDPPSSRDPPFPAAVSASNHLTSSLTTESTASGINKGSNRNGGLGLSDIITQIQASKDSAKLSYHSNVGIEPLSSISSYSSKRASERLHERSSLDDNIDIRETRRFMKPNHDKQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDDNQLSLGEVPNYAEGPSSLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGVIEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVLACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHSMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGYSRKAHYLGRYSAGSLDGDGGRKWSSQDSTLVKASLGQASSGETQEHLYQNFETDPNSGSLASKTKDLVYAVNPMGQNFTSQTSHRHVESSISLEGLSTPRLDVNGLMSPEHLNVAEGYVNDKEYSSELGLNHHTDEDVKINSITEAGPSIPQILHMVCSGGDGSPVSSKRTALQQLVDASITNDHSIWTKYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGAMENSVEIVIEKLLNVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKTIDAVQD 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01934 1444 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Phco2g01934 1444 Gene3D - 796 1020 IPR011989 -
Phco2g01934 1444 MobiDBLite consensus disorder prediction 633 660 - -
Phco2g01934 1444 MobiDBLite consensus disorder prediction 610 660 - -
Phco2g01934 1444 Pfam CLASP N terminal 284 500 IPR024395 -
Phco2g01934 1444 Pfam CLASP N terminal 802 996 IPR024395 -
Phco2g01934 1444 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Phco2g01934 1444 MobiDBLite consensus disorder prediction 246 261 - -
Phco2g01934 1444 MobiDBLite consensus disorder prediction 243 266 - -
Phco2g01934 1444 Gene3D - 1 221 IPR011989 -
Phco2g01934 1444 Gene3D - 1227 1436 IPR011989 -
Phco2g01934 1444 PANTHER CLASP 32 1430 - -
Phco2g01934 1444 Gene3D - 267 506 IPR011989 -
Phco2g01934 1444 FunFam Protein peg1 266 513 - -
Phco2g01934 1444 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Phco2g01934 1444 SMART TOG_3 1197 1436 IPR034085 -
Phco2g01934 1444 SMART TOG_3 270 514 IPR034085 -
Phco2g01934 1444 SMART TOG_3 780 1029 IPR034085 -
Phco2g01934 1444 SMART TOG_3 3 224 IPR034085 -
Phco2g01934 1444 MobiDBLite consensus disorder prediction 503 533 - -
Phco2g01934 1444 SUPERFAMILY ARM repeat 7 401 IPR016024 -
Phco2g01934 1444 SUPERFAMILY ARM repeat 290 1434 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01934 Phco-Chr2 50002757 50014994 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01934 2 50002757 50014994 Phco2g01934 2 50002757 50014994 ECH
Phco2g01934 2 50002757 50014994 Phco6g00756 6 7500951 7519885 PCT