Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01927 ATGGCTGCTACTGCCAATCCTATAGTTGGGTCCCAGATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAAGGAGAAGTAATTAAAGTCGTTTGTTCTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACCGAAGTTCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTTATAAGGCTCCCTCATTTATATGATAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGCGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAATCAATATTGGTTAGTGGTGAAAGTGGAGCCGGTAAAACAGAAAGTACCAAGCAACTCATGAGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGAAGGTAGAACTATCGAGCAAAAGGTCCTTGAGTCCAATCCTGTTCTGGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATTTCAGGAGCTGCTATCAGGACTTATCTGCTTGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCAGAGGTTGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGAGGGGCTTGATGAATCTAAGGAATATAGGGATACAAGGAGAGCTATGGATATTGTTGGAATAAGTGCCGAGGAGCAGGATGCAATTTTTAGAGTTGTTGCTGCGATTTTACATCTTGGAAACATCGAATTTACGAAAGGGAAGGAGATAGACTCATCTGTGCCCAGAGATGAAAAATCTTGGTTCCATCTGCAGACTGCTGCTGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGAGATGAAACAATTACGAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCCTTGGCTAAGATTGTGTACTCAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATAGGTCAAGATCCTGAGTCAAAATCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACAAACAGTTTTGAACAATTTTGTATTAACTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAGGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACATGAAACTTTTTCCCAAAAGCTGTATCAGACCTTCACAAACCATAAAAGGTTTAGCAAACCTAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTTGACAAAAACAAAGATTACGTCGTTGCAGAGCACCAGGCACTTCTTTATGCTTCAAAATGCCCCTTTATATCGGGTTTGTATCCTCCTTCACCTGAGGAATCTTCGAAACAATCAAAGTTCTCCTCCATTGGCTCACGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTCAGTTCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAACAATCTTCTCAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCTACAAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGTTGTCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGAAGAAGTGAAATCTTAGGAAGGTCAGCAAACATTATTCAGAGAAAAATTCGTTCATATTTGTCACGTCGAAGTTTCATATTGCTTCGTCTGTCGGCTTTGAGGATTCAAGCTGCGTGCAGAGGACAACTTGCTCGGAAAGTATACGAGGGAATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGGTGCTTCCGAATGCATATTGCTAGGAGGGCATACAAAGGTTTGTATACTGCTGCTGTCTCTATCCAGACAGGTATGAGGGGAATGGCTGCCCGATGTGAGCTATACTTTAGAAGGAGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCAGAAATACTTGGCACAACTTCATTTCACCGAGCTAAAGAAAGCAGCAATCACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCAAGAGTTGCGAAAGCTCAAGTTGTCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAAAGCAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAGAAACGTTTGAGGGTTGACATGGAAGAAGCAAAAGCTCAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTACTTCTTGAAAAGGAGAGGGAGGCTACAAAAATAGCAGAAGAGAAAGCTCCCATTATACAGGAGATTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTACAAAGAGGCTAACAAAATTGGTGAAGAAAGGTTAAAGCAAGCTTTGGATGCGGAATCAAAAGTAGTCCAGTTGAAGACTGCTATGCAGAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAATCATATTCTTCAGAAACAATCACTACTAAACTCATCTGTGAAAACAATAGCAGAGCACCTGTCTTCCCCAGTGGACGAGAAATTAGAAAATGGTCACCATGTGGCAGAAGAGCAGAAAGCTGTTGATACATATGTCACGCCTGTGAAACAATTTGGTACAGAATCTGACTTCAAACTGAGGAGATCTTACATTGAACGACAACATGAGAATGTTGATTCGCTTGTTAACTGTGTTATGAAAAATATTGGCTTCAATCATGGAAAACCAATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACCAGTGTATTTGATCGCCTGATTCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGCAATGATCATATGGCCTATTGGCTGTCGAATACATCTGCGTTATTGTTTTTACTTGAGCAAAGTCTTAAATCTGGGAGTTCAACAAATTCTACCCCAGTTAGAAAACCACCTAATCCAACATCCCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATCCGATGTTGTGCGCAAGGTAGAAGCTAAGTACCCCGCCTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACTGCAGTTCTTGCTTTATGCATCCAGGCACCAAGAACATCAAAGGGAGGGTTACGTTCTGGTCGATCCTTAGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTACTATTGAATCCCTAAATACCCTCCTCTGTACATTAAAAGAGAACTTTGTGCCACCAGTTCTTATTCAAAAGATCTTCAGTCAGACATTCTCATACATTAATGTGCAACTTTTCAATAGTCTTCTTCTTCGACGCGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAAGCAAAGGAAGAGCTTCAACTAATTGCCTTGATCACAAACTTGCAGTATGCAGGGTCATCATGGGATGAACTCAAACACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTACAGGATTTCCTACGATGAAATCATCAACGATTTATGTCCTATCCTGAGTGTCCAACAGCTATACAGAATATGTACACTTTATTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTACTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCTAGCATCCCCTTCTCAGTGGATGATCTTTCTACATCAATGCAAGAGAAGGATTTTTCAGACATGAAACCAGCGGATGATCTTCTTGAAAATCCAGCCTTCCAATTTTTGAATGAGTAG 4569 0.4056 MAATANPIVGSQIWVEDPDVAWIDGEVLEVKGEVIKVVCSSGKTVVVKASSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKQLMRYLAYMGGRAAAEGRTIEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEVVKKYKLGDPRMFHYLNQSNCFELEGLDESKEYRDTRRAMDIVGISAEEQDAIFRVVAAILHLGNIEFTKGKEIDSSVPRDEKSWFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFSQKLYQTFTNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLYASKCPFISGLYPPSPEESSKQSKFSSIGSRFKQQLQSLLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKRILKNVGLEGCQIGKTKVFLRAGQMAELDTRRSEILGRSANIIQRKIRSYLSRRSFILLRLSALRIQAACRGQLARKVYEGMRQEASSLVIQRCFRMHIARRAYKGLYTAAVSIQTGMRGMAARCELYFRRRTKAAIVIQSHCQKYLAQLHFTELKKAAITTQCAWRGKVARQELRKLKLSARETGALQAAKSKLEKQVEDLTLRLQLEKRLRVDMEEAKAQENQRLQSALQEMQLQFKETKLLLEKEREATKIAEEKAPIIQEIPVVDHALLEKLSSENEKLKNMVSSLEKKIDETEKRYKEANKIGEERLKQALDAESKVVQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPVDEKLENGHHVAEEQKAVDTYVTPVKQFGTESDFKLRRSYIERQHENVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSTNSTPVRKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTAVLALCIQAPRTSKGGLRSGRSLAKDSPMVHWQSTIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEELQLIALITNLQYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSMQEKDFSDMKPADDLLENPAFQFLNE 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01927 1522 CDD MyosinXI_CBD 1107 1491 IPR037975 GO:0007015
Phco2g01927 1522 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Phco2g01927 1522 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Phco2g01927 1522 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Phco2g01927 1522 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Phco2g01927 1522 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Phco2g01927 1522 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Phco2g01927 1522 CDD MYSc_Myo11 76 720 IPR036018 -
Phco2g01927 1522 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Phco2g01927 1522 Pfam DIL domain 1333 1446 IPR002710 -
Phco2g01927 1522 Coils Coil 1014 1048 - -
Phco2g01927 1522 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 ProSiteProfiles Dilute domain profile. 1156 1468 IPR002710 -
Phco2g01927 1522 Gene3D - 833 882 - -
Phco2g01927 1522 Gene3D - 785 832 - -
Phco2g01927 1522 Gene3D - 735 784 - -
Phco2g01927 1522 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Phco2g01927 1522 FunFam Myosin 2 312 430 - -
Phco2g01927 1522 FunFam Class V myosin 439 579 - -
Phco2g01927 1522 Coils Coil 972 1006 - -
Phco2g01927 1522 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Phco2g01927 1522 Gene3D Kinesin motor domain 65 662 IPR036961 -
Phco2g01927 1522 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PANTHER MYOSIN 58 1456 - -
Phco2g01927 1522 FunFam unconventional myosin-Va 833 881 - -
Phco2g01927 1522 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 SMART iq_5 853 875 IPR000048 GO:0005515
Phco2g01927 1522 SMART iq_5 757 779 IPR000048 GO:0005515
Phco2g01927 1522 SMART iq_5 734 756 IPR000048 GO:0005515
Phco2g01927 1522 SMART iq_5 805 827 IPR000048 GO:0005515
Phco2g01927 1522 SMART iq_5 782 804 IPR000048 GO:0005515
Phco2g01927 1522 SMART iq_5 830 852 IPR000048 GO:0005515
Phco2g01927 1522 Gene3D - 439 623 - -
Phco2g01927 1522 Coils Coil 891 950 - -
Phco2g01927 1522 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Phco2g01927 1522 Gene3D - 252 310 - -
Phco2g01927 1522 SMART DIL_2 1332 1450 IPR002710 -
Phco2g01927 1522 FunFam Myosin heavy chain 252 307 - -
Phco2g01927 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 785 IPR027417 -
Phco2g01927 1522 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Phco2g01927 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Phco2g01927 1522 Gene3D - 666 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01927 Phco-Chr2 49875985 49899392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01927 2 49875985 49899392 Phco2g01927 2 49875985 49899392 ECH
Phco2g01927 2 49875985 49899392 Phco6g01094 6 11030995 11046129 PCT
Phco6g00746 6 7381981 7401711 Phco2g01927 2 49875985 49899392 PCT