Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01902 ATGGCATCTTCTTTCCATTCCCTCACATTCTCCTCCTCCCTGTTCAAAACTCTAAACAACTCACCTTCTTCTTTGCTGATCAAAAGAAAAAACTCACCTTCTTCTTCAGTCCCATCTATGATTTTTCATCACAGAAGACACTCTTCATTCACTGGCCAATCTGTAAACCTGCCAAGTTTGAGGTTATCCAAGCTAAAGCAAAAGCCTCCAAAACACATGCCTGCTATCATGATGGCCAAACCAACCATACAGTTCATTAAGGGAACTGATGAACAGACAATACCAGATGTGAGGCTTACTACATCACGTGATGGAACAAATGGTATGGCAATCTTCAACTTTGATCAACCCTCAGTTTTTGATTCTTCTCGTGAAGTTGGTGATATCACTGGTTTATACATGATTGATGAGGAAGGGGTCCTTCAGTCTGTTGATGTGAGTGCTAAGTTTGTCAATGGAAAGCCCTCAGGAATTGAAGCCAAGTATGTGATGCGGACTCCACGAGATTGGGACAGATTCATGAGATTTATGGAACGATATTCTGATGCAAATGGTTTGCAATTCATTAAAAAATAA 576 0.4045 MASSFHSLTFSSSLFKTLNNSPSSLLIKRKNSPSSSVPSMIFHHRRHSSFTGQSVNLPSLRLSKLKQKPPKHMPAIMMAKPTIQFIKGTDEQTIPDVRLTTSRDGTNGMAIFNFDQPSVFDSSREVGDITGLYMIDEEGVLQSVDVSAKFVNGKPSGIEAKYVMRTPRDWDRFMRFMERYSDANGLQFIKK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01902 191 NCBIfam photosystem II reaction center protein Psb28 83 189 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Phco2g01902 191 Pfam Psb28 protein 83 188 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Phco2g01902 191 Hamap Photosystem II reaction center Psb28 protein [psb28]. 80 189 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Phco2g01902 191 FunFam Photosystem II reaction center Psb28 protein 81 191 - -
Phco2g01902 191 Gene3D Photosystem II Psb28 78 191 IPR038676 -
Phco2g01902 191 PANTHER - 9 191 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01902 Phco-Chr2 49596212 49597043 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01902 2 49596212 49597043 Phco2g01902 2 49596212 49597043 ECH
Phco2g01902 2 49596212 49597043 Phco6g00731 6 7256819 7258414 PCT