Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01778 ATGAGCCCTCTTGAAAAAGAAGGTAAGGAAAGTGAGATACTTTCCCTATCACTAAAAAGAAAAGGCACAAAAAAAACTCTCTCTATCAATTCATTTGTTGCATTTTCCAAGCTGATTCGTTTGGTTTTTGAAGTGGAAGGGTGTGGTGCTGTTGTGGAGATCCGGGAGTTGTTTCGTCTCTTATGCCCCATGAGGAGTTTCTTCCCTGCAGAATCCTGTAAAGAGACGCACCCAAATGCTTTGAATCCTCAATCTTGGCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCGCACCCTTCCTCTGCCTCGATAGAATCTCTGGTCAAGGTCCCTCAGCCAGCTTTACTACCTTTCTATAAGCCTGCTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAGCTTGAGTCTTGTCCTCCACAAGAGCGGTCGAATCTGTTTTTATTACAGTACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTTCAGGGAGCCTGGCAGAGAGCCAACACTCTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATACGAGAAGCAAGAGGAAGAACTAATCGCCGACTTGCTTGCCAATTGTGGTAAATGTGCGAAGGAGTTTGCACCTGTAGATATAGCATCTCATCTTCCATTTGATGTAAATGTAAGTTCTGTGGGCAGAATGACCAAGGAGAACCACATTTCTCAAAATGTTACTTTTAAAATTGGCGATGAAGAGATAGTTTGTGATAGACAAAAAATTTCTGAACTTTCGGCACCATTTCATGCTATGCTAAAGGGGTATTTCAGCGAATCACGTGCTGAGTCTATAGATTTGTCTGAAAATAATATTTCTCCACTAGGTATGAAGGCAATAAGTAATTTCAGTTTGACTGACAGTTTAATTGAGGTCCCTCCAAATCTTTTATTGGAGATATTAGTTTTTGCAAATAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCTTGGTTTCCTCCAAAGAAGATGCTGTAGAGCTCATGGAATATGCTCTTGATGAGAATTCAACTGTCCTTGCTGCATCCTGTTTGCAAGTCCTTTTGCGTGATCTTCGAAACTCTTTGAATGACAGTCGGGTAGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGCAGTCATGGTTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCGGACAAAACAGCTCATATCCTGGAACGGTTAGTTGAATTTGCTGAGAATGATAAACAGAGACTGCTGGCTTTACATCAGTTAGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCACGTCTTCTTTTTGAAGGGGCCGTAAAAGCAGGCCATATATATTCTGTGGCAGGTTTAGCTAGACTGGACTTTATAAAGGGTGACAAGCTTTTATCTTATGAGCAGTTCAGCTCAGTCATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAAAGGTCATTATACTGTGACAGTGACAAAAGGTGGGATGACCTTGAGAAAGCAAGTAATTTGGATCCTACACTTGCATATCCTTACATGTACAGGGCTGCCTCTTTGATGAGGACGCAGAATGCTCAAGCTGCACTCGCAGAAATCAATAGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTAGAAATAAGATTTTTTATTCATCTGACTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTACGTTCAGATTATAGAATGTTTGAGGGACGTGTTGCTGCATCCCAACTCTGCACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACTGCTGATTGTTGGGCCCGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCTGTTATATACCAGATGCTTGAATCTGATGCGGCAAAAGGTATTCTGTACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAACTGTCCTGAGGCTGCTATGCGAAGTTTACAGTTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAAGAAGGGCTCCGGAAAGCGGAAGAGTCTATTAGTATCAAAAGATCTTTTGAGGCATTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGCATAGATCCATCATGTTCACCAATTGTTATCTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACTGCGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATCCGACACACCCGAGCTCATCATGGTCTTGCCCGTGTTCATTGCCTAAAAAATGACAAGACTGCTGCTTATATGGAAATGACAGAACTTATCAAGAAAGCAAAAAACAATGCATCGGCTTATGAGAAGAGGTCTGAGTATTGTGATCGTGAACAAGCAAAGGCAGATTTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCTTATAGATATCGGGCTGCAGTATTGATGGACAACCACAAGGAAGAGGAGGCCATAGCCGAACTCTCAAGAGCAATCGCATTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCTTTTCATGAACACAAAGAGGACGTCTTAGGCGCTCTAAGAGATTGTCGTGCTGCCCTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATAGTCGAGTCAATAGACACGAGCCGTGA 2850 0.4189 MSPLEKEGKESEILSLSLKRKGTKKTLSINSFVAFSKLIRLVFEVEGCGAVVEIRELFRLLCPMRSFFPAESCKETHPNALNPQSWLQIERGKLPKLSSHPSSASIESLVKVPQPALLPFYKPADYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRANTLHEKIIFGAWLKYEKQEEELIADLLANCGKCAKEFAPVDIASHLPFDVNVSSVGRMTKENHISQNVTFKIGDEEIVCDRQKISELSAPFHAMLKGYFSESRAESIDLSENNISPLGMKAISNFSLTDSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSTVLAASCLQVLLRDLRNSLNDSRVVEIFVHANKQQLAVMVGPGIFALFCFLSEVSMNLNSSSDKTAHILERLVEFAENDKQRLLALHQLGCVRLLRKEYDEARLLFEGAVKAGHIYSVAGLARLDFIKGDKLLSYEQFSSVISSVTPLGWMYQERSLYCDSDKRWDDLEKASNLDPTLAYPYMYRAASLMRTQNAQAALAEINRILGFKLSLECLEIRFFIHLTLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSIDPSCSPIVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKTAAYMEMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01778 949 SUPERFAMILY TPR-like 755 940 IPR011990 GO:0005515
Phco2g01778 949 Gene3D Tetratricopeptide repeat domain 417 643 IPR011990 GO:0005515
Phco2g01778 949 ProSiteProfiles TPR repeat profile. 772 805 IPR019734 GO:0005515
Phco2g01778 949 SMART BTB_4 242 342 IPR000210 GO:0005515
Phco2g01778 949 Coils Coil 824 844 - -
Phco2g01778 949 Gene3D Tetratricopeptide repeat domain 659 843 IPR011990 GO:0005515
Phco2g01778 949 Gene3D Potassium Channel Kv1.1; Chain A 231 383 IPR011333 -
Phco2g01778 949 Coils Coil 426 446 - -
Phco2g01778 949 SUPERFAMILY TPR-like 437 606 IPR011990 GO:0005515
Phco2g01778 949 PANTHER ETO1-RELATED 64 948 IPR044631 GO:0010105
Phco2g01778 949 Gene3D Tetratricopeptide repeat domain 844 948 IPR011990 GO:0005515
Phco2g01778 949 SMART tpr_5 698 731 IPR019734 GO:0005515
Phco2g01778 949 SMART tpr_5 443 476 IPR019734 GO:0005515
Phco2g01778 949 SMART tpr_5 664 697 IPR019734 GO:0005515
Phco2g01778 949 SMART tpr_5 772 805 IPR019734 GO:0005515
Phco2g01778 949 SMART tpr_5 901 934 IPR019734 GO:0005515
Phco2g01778 949 SUPERFAMILY POZ domain 237 338 IPR011333 -
Phco2g01778 949 SUPERFAMILY TPR-like 578 801 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01778 Phco-Chr2 48295160 48306819 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01778 2 48295160 48306819 Phco6g00971 6 9480303 9484966 PCT