Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01687 ATGGACGTCGCCTCCTACTCCCTGCTTTTCATGTGCTTTCTTCAATCGGTCAGAGGAATATTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCGCTTCACGATGTTCCCGGTTCAAATTTCTTCGCCTCCTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTATACTGCGCCAACGATAAAGTCGTCGCGCTTAACCTCGGCGACCCCAGGGCCGGTTCGCCCGGTCTGACAGGAAAACTAGACCAATCGATCTCCAAGCTATCTGCTCTCGCCGACCTCACCGTCGTTCCCGGAAGAATATACGGCCCTCTCCCCAACTCTCTCTCCCAATTAAAAAACCTCCGGTTCCTCGGCGTCAGCCGGAATTTCATCTCCGGCGATATTCCGGCGGGTGTAGACCAGCTTCGCAATATTAGAACCATCGATCTAAGTTACAACCAGCTCACCGGAACAATTCCTGCTTCCATCGGAACCTTACCGCAGCTAACCAACCTTATCCTCTGCCACAACCGCCTCTCCGGTTCAGTTCCCTCGTTCGCCTCGGCTTATTCCCTAACCCGGCTCGAACTGAAGCACAACACTCTCTCCGGTTCCCTCGCACCGTACTCTCTCCCTCCCTCCCTACACCACCTCTCTTTATCATGGAACAAACTCACTGGATCCGTGGACCGCCTCTTAACCCGCCTCAACCGGCTTAACTACTTGGACCTTAGCTTGAACCACTTCACAGGCCCAATTCCTGCCCAAATATTCTCATTCCCCCTCACCAATCTACAACTGGAAAGAAACCAATTCTCCGGCCCGGTTCACCCGGTCAACGAGGTGACGATTCAGACCGTTGATCTCAGCTACAATAGGTTATCCGGTGAGGTGTCGCCCATGCTAGCGAGCGTTCAGAACCTGTACCTGAACAACAACGGCTTTACAGGGCAGGTCCCGGGCAGCTTCGTGGAACGGTTATTGGCGGCGGGCATTCAGATACTGTATCTGCAGCACAATTTTCTTACCGGAATTGCGATAAGCCCGACGGCAGATATTCCGGTGAGCAGCACCCTGTGTTTGCAGTATAACTGCATGGTTCCACCGGTCCAGACGGCGTGCCCCTTCAACGCCGGGAGGCGGAAAATCAGGCCAGCTCAGCAGTGCAACCGCCGCTAA 1176 0.5459 MDVASYSLLFMCFLQSVRGILDPNDFLALQSIRKSLHDVPGSNFFASWDFTADPCNFAGVYCANDKVVALNLGDPRAGSPGLTGKLDQSISKLSALADLTVVPGRIYGPLPNSLSQLKNLRFLGVSRNFISGDIPAGVDQLRNIRTIDLSYNQLTGTIPASIGTLPQLTNLILCHNRLSGSVPSFASAYSLTRLELKHNTLSGSLAPYSLPPSLHHLSLSWNKLTGSVDRLLTRLNRLNYLDLSLNHFTGPIPAQIFSFPLTNLQLERNQFSGPVHPVNEVTIQTVDLSYNRLSGEVSPMLASVQNLYLNNNGFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTADIPVSSTLCLQYNCMVPPVQTACPFNAGRRKIRPAQQCNRR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01687 391 Gene3D Ribonuclease Inhibitor 187 377 IPR032675 -
Phco2g01687 391 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Phco2g01687 391 SUPERFAMILY L domain-like 32 365 - -
Phco2g01687 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 389 - -
Phco2g01687 391 Pfam Leucine Rich repeat 212 226 IPR001611 GO:0005515
Phco2g01687 391 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Phco2g01687 391 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Phco2g01687 391 FunFam Nuclear pore complex protein NUP107 23 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01687 Phco-Chr2 47228811 47229986 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01687 2 47228811 47229986 Phco2g01687 2 47228811 47229986 ECH
Phco2g01687 2 47228811 47229986 Phco6g00895 6 8712499 8713689 PCT