Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01553 ATGGTTAAAAAGATGATGATGCTAAAGACAACATCAACGCAGTTCTCTACGTGGATTACTCCTTTGCGTGAACCTCGTTGCAATCTATCTAACGTCTGCTTAACCTTTAGAATCCATCACCATCATCATAACCCCCTAGCGGTGAAGTGTTCGAAAATGACTGTCACACCTAAGATCTTGGTTAACGATAGGAAATTGGTTGTTCATGGCAAGACCATATTAACCGGAGTACCAGACAACATTGTGCTGACTCCAGGATCTGGAAGTGGCCTTGTGACTGGTGCTTTTGTTGGTGCTACTGCCTCCCACAGCAAAAGTCTCCATGTGTTTTCAATGGGTGTCTTAGAGGAGCTCCGGTTCATATGCTGCTTTCGCTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCTCTGGAGACACAGTTCATGCTAATTGAGAGCAAAGAGAGTGAAGTGGATGGAGAGAATTCTCCAACCATCTACACTGTCTTTCTTCCTCTTCTCGAAGGTCCATTCCGAGCTGTTCTTCAGGGCAATGAGAAGAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAACGCGGTCGAGACTGATCAAGGCCTTCACCTAGTCTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCAGTCAAGGCCGTGGAAAAACACATGCAAACTTTTCTTCACCGTGAGAAGAAAAAGTTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGATGGTCTGAAAAGTCTATCTGAGGGAGCTACACCACCACGGTTCCTCATCATAGATGATGGCTGGCAACAGATTGAAAGTAAACAAAAGGATCTTGACTGTGTTGTACAAGAAGGGGCACAGTTTGCTACTAGGTTGACTGGCATTAAAGAGAATACTAAATTTCAGAAGAAAACATCCAGCAATGAGCAGACATCAGGTCTGAAGCATTTAGTAGATGGAGTAAAGCAGCATCACAACGTGAAAAATGTTTATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGCAACTGGCATGGAGCATTATGACACAGCCTTGGCCTATCCAGTGCAGTCACCAGGTGTCCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGGCCGTACATGGCCTTGGCCTAGTGCACCCAAAGAAGGTTTTCAACTTCTACAATGAGCTCCATGCTTACTTGGCTTCATGTGGAGTGGATGGTGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGAAGAGTCTCTCTTACACGAAGCTATCATCACGCTCTTGAAGCTTCCATTGCTCGTAACTTTACTGACAATGGATGCATTGCTTGCATGTGTCACAACACTGATGGGCTTTATAGTTCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTCTACCCTCGTGATCCCGCTTCCCACACTATTCATATTTCATCTGTTGCATACAACTCGCTTTTCCTTGGAGAGTTCATGCAACCTGATTGGGACATGTTCCATAGTTTACACCCTGCAGCAGAATATCATGCTGCAGCTCGTGCAATGGGTGGATGTCCAATTTATGTTAGTGACAAGCCAGGCCACCACAATTTTGATCTTCTTAAGAAGCTGGTTCTTCCCGATGGTTCGGTTCTCCGAGCACAGTTACCAGGCAGGCCAACCCGTGATTCTCTCTTTGTTGATCCAGCCAGAGATGGGACTAGCTTGCTCAAAATCTGGAACATGAACAAATGCTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGGTGGTGCAAGATAGAGAAGAAAACTCGCATCCATGATACATCTCCCGGCACACTCACTGGCTCTGTCTGTGCCTTTGATGTTGACCCTATCACACAAGTAGCAGGTGCTGAGTGGCTTGGAGAGACAATTGTTTATGCTTATAGATCAGGTGAGGTGATTCGGCTACCAAAGGGGGTTTCAGTTCCGGTGACACTAAAAGTTCTTGAGTTTGAACTTTTCCATTTCTGTCCAATCCATGAAATAGCACCAAGTATTTCATTTGCAGCAATTGGGCTACTGGATATGTTCAACACTGGAGGAGCTGTGGAGCTGGTTGAAATTCACAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTGGTCAGAATTTACCTCTTCTCTCGGTCCTAACCGAGCAGCAACAGCAACTATTTCTCTTAGAGTCAGGGGAACAGGCAGATTTGGAGTTTACTCCTCTCAACGCCCACTGAAGTGTGTAGTAGGTGGCACTGAAACCGACCTCAGCTATGACTCGGAGACTGGGTTGGCAACCTTCTCCATCCCAGTTCCTCAAAAGGAGATGTACAGATGGGCAATAGAGATCCAAGTTTGA 2478 0.4621 MVKKMMMLKTTSTQFSTWITPLREPRCNLSNVCLTFRIHHHHHNPLAVKCSKMTVTPKILVNDRKLVVHGKTILTGVPDNIVLTPGSGSGLVTGAFVGATASHSKSLHVFSMGVLEELRFICCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPTIYTVFLPLLEGPFRAVLQGNEKNEIEICLESGDNAVETDQGLHLVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEDGLKSLSEGATPPRFLIIDDGWQQIESKQKDLDCVVQEGAQFATRLTGIKENTKFQKKTSSNEQTSGLKHLVDGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFTDNGCIACMCHNTDGLYSSKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAMGGCPIYVSDKPGHHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTGSVCAFDVDPITQVAGAEWLGETIVYAYRSGEVIRLPKGVSVPVTLKVLEFELFHFCPIHEIAPSISFAAIGLLDMFNTGGAVELVEIHRASNNKPELFDGEVWSEFTSSLGPNRAATATISLRVRGTGRFGVYSSQRPLKCVVGGTETDLSYDSETGLATFSIPVPQKEMYRWAIEIQV 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01553 825 Gene3D Aldolase class I 249 572 IPR013785 -
Phco2g01553 825 Pfam Raffinose synthase or seed imbibition protein Sip1 61 808 IPR008811 -
Phco2g01553 825 PANTHER - 53 823 IPR008811 -
Phco2g01553 825 SUPERFAMILY (Trans)glycosidases 247 577 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01553 Phco-Chr2 45714375 45718901 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01553 2 45714375 45718901 Phco2g01553 2 45714375 45718901 ECH
Phco2g01553 2 45714375 45718901 Phco6g00285 6 2800789 2805321 PCT