Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01430 ATGTGCGTCAACCCTTCGCATTTGCACTGCACGCCCATACACGACCAGCACCTCCATTATAGAAGAGGTTTAGCACTTCCCTTCTATCACTGCTTCTTCACTGTTTCTTCAGCTTCGAAACCACCGATGTGGGCTCTTCGTCGAGCTTCCATCCCTCTCAGGATCCGAGGGTATAATGTGAGAACTTCTTTTCTCCAATTAGCGCCAACTAATTGTGTGGAAGAAGAGAGTGGTATCACTGAGTCTCATGGAATAACTAATGGTGGATTGTTGCTGTGCAATACGCGTTTTTATTCGGGACAAAGTGCATCACTGGATTTTACTGTGTGGAGACGCGAGCTTTCTTCTAGTAGCACCAAAGAAGATGATGATTTGGAAGATGGGTTTTCCGAGCTGGAGACACCTGCTGGCGATGGAAATGAAATTGACAGTCTTTTAGCTTCTGATGCCTACCAATCGGATGCCGATGGTGACAGCGAGAATGTAGAGGAGCCTCACAACGAGGTTGATGAGGTGGTCAAGGAGAAAGGAAAACCGCGTCGTGGAAGGGTTGAATCTGAACTATTAAATGAGATCATGAATGTTCCGAGTGAGTCTACTCATGTGGCTCTGGAGAAGTGGTTAGCAGATGGGAATGAACTAACCAGAGAGGAGGTGTCACATGCCATGTTTAATCTTCGAAGGCGAAAGATGTTTGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAACCAGTTTGAGTTTCTTGAAAGGGATCATGCAGTTCGCCTTGATTTAATTGCCAGAACACGTGGCTTACATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGTAGAGAGATAATGCATCGGACTTTATTGGCTAACTGTGTCAGTCTGAACAATGTGAAGAAAGCAGAGGAAGTTTTCAATAAAATGAAGAATTTGGACTTTATTACAGTATTTGCTTGCAATCAGATGTTACTTTTGTATAAGAGGAATTACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATGGAACCATCTTCTCTAACTTATTCAATCTTAATAGACACAAAAGGCCAGTCCAGAGATATTGATGGAATGGATCAAATTCTTGATAGAATGAAAGCTCAAGGCATTGAACCCGACATCAAAACACAGGTTGTTTTGGCTAGGCACTACATCTCAGCTGGGCTTCAAGATAAAGCTGAAACCTTATTGAAGGAGATGGAAGGTGAAAACTTAAACCAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCCAACTTAGGAAAGGTGGATGAAGTGGAAAGAATTTGGAAGGTCTGTGAGACAAACCCTCGACGTGATGAGAGTCTTGTGGCAATTGAAGCTTGGGGAAAGTTGAATAAGGTTGATGAAGCAGAGAATGTTTTTGAGACAATGATAAAGAAATGGAAGCTTTCTTCCAGGACCGGCTCTGTACTACTGAAGGTTTATGCAAATCATAACAAGCTAATTAAGGGTAAGGATCTCATTAAGCGAATGGGAGATAGCGGGTGCCAAATAGGCCCACTTAGCTGGGATGCGATGGTGAAACTATATGTCGAAGCCGGGGAAGTGGAGAAGGCAGACTCTATTCTTCAAAGGGCAGCCCAGCAGAGTCGGATGAAGCCGATGTTTTCCACCTACCTAACTATTTTGCAGCAGTATGCGGAGAGGGGTGACATTCATAACTCAGAAAAGATTTTCTATAGAATGAAACAAGATTATTATCCATCTAGACCAAGGATGTACCAATTTCTACTGAACGCCTATATAAATGCAAAGGTTCCAGCCTATGGGATTAGGGACAGGTTAAGAGCTGATAGCATATTGCCCAGTAAAACTTTGGCAAACCAGTTGATTCAAGTTGATAGATTTAGGAAGAATTCAGTCTCCGATTTGCTTGACTGA 1953 0.4275 MCVNPSHLHCTPIHDQHLHYRRGLALPFYHCFFTVSSASKPPMWALRRASIPLRIRGYNVRTSFLQLAPTNCVEEESGITESHGITNGGLLLCNTRFYSGQSASLDFTVWRRELSSSSTKEDDDLEDGFSELETPAGDGNEIDSLLASDAYQSDADGDSENVEEPHNEVDEVVKEKGKPRRGRVESELLNEIMNVPSESTHVALEKWLADGNELTREEVSHAMFNLRRRKMFGRALQLSEWLESKNQFEFLERDHAVRLDLIARTRGLHKAEVYIETIPESCSREIMHRTLLANCVSLNNVKKAEEVFNKMKNLDFITVFACNQMLLLYKRNYKKKIADVLLLMENENMEPSSLTYSILIDTKGQSRDIDGMDQILDRMKAQGIEPDIKTQVVLARHYISAGLQDKAETLLKEMEGENLNQNRWLCRILLPLYANLGKVDEVERIWKVCETNPRRDESLVAIEAWGKLNKVDEAENVFETMIKKWKLSSRTGSVLLKVYANHNKLIKGKDLIKRMGDSGCQIGPLSWDAMVKLYVEAGEVEKADSILQRAAQQSRMKPMFSTYLTILQQYAERGDIHNSEKIFYRMKQDYYPSRPRMYQFLLNAYINAKVPAYGIRDRLRADSILPSKTLANQLIQVDRFRKNSVSDLLD 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01430 650 PANTHER OS12G0527900 PROTEIN 115 629 - -
Phco2g01430 650 Pfam Pentatricopeptide repeat domain 375 419 IPR002885 -
Phco2g01430 650 Pfam Pentatricopeptide repeat domain 319 364 IPR002885 -
Phco2g01430 650 Gene3D Tetratricopeptide repeat domain 460 646 IPR011990 GO:0005515
Phco2g01430 650 Gene3D Tetratricopeptide repeat domain 283 459 IPR011990 GO:0005515
Phco2g01430 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Phco2g01430 650 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 284 458 - -
Phco2g01430 650 MobiDBLite consensus disorder prediction 119 180 - -
Phco2g01430 650 Pfam PPR repeat 561 589 IPR002885 -
Phco2g01430 650 Pfam PPR repeat 526 549 IPR002885 -
Phco2g01430 650 Pfam PPR repeat 462 484 IPR002885 -
Phco2g01430 650 Pfam PPR repeat 494 520 IPR002885 -
Phco2g01430 650 Pfam PPR repeat 290 314 IPR002885 -
Phco2g01430 650 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 459 644 - -
Phco2g01430 650 NCBIfam pentatricopeptide repeat 355 388 IPR002885 -
Phco2g01430 650 NCBIfam pentatricopeptide repeat 287 315 IPR002885 -
Phco2g01430 650 MobiDBLite consensus disorder prediction 159 180 - -
Phco2g01430 650 SUPERFAMILY TPR-like 384 592 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01430 Phco-Chr2 43586992 43597207 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01430 2 43586992 43597207 Phco6g01558 6 16851059 16851469 ECH
Phco2g01430 2 43586992 43597207 Phco2g01430 2 43586992 43597207 ECH