Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01077 ATGAAAGGAAAGAACAGGAGAAGTGGTGGTGCTGTTCATATGGAATACCTAATTCACATTCAGGAGATCAAGCCTTGGCCCCCATCGCAATCTCTGAGATTGCTTCGTTCTGTATTGATACAATGGGAGAATGGGGAACGTGCTTCAGGGTCTACTGGTATTGTTTCCCCTTCTCTCAGTCCTAGTTCTGTTGCTGGTGAAGGAAAGCTTGAGTTTAATGAATCATTTAAGCTTCCTGTAACTCTGTCAAGGGATATGTCTATCAGAAATAGTACTGCTGAGGTGTTCCAAAAGAATTGCTTGGAGTTCCACTTGTATGAGACTCGAAGAGACAAGACTGTTAAAGGGCAGTTGCTGGGAACTGCCATTATAGACTTGGCAGATTGTGGTGTACTTAGAGAGACTTTGAGTATTCGTACGCCATTGAACTGCCAGAGGAACTACAGAAACACGGATCAGCCACTTTTGTTCATTCAAATTGAGCCTGTTGAAAAGAGTTACCCTAGATCCTCTTTGAAAGACAGCTTGTCAAAGGGGGTGCCAAAGGACAATAACGGCAATGAATCTGTATCAGCATTGATGAATGGAGAGTATGCTGAGGAAGCTGAGATTGCCTCTTTTAGTGATGATGATGTTTCCTCTCATTCGTCTGTGGCTGCAGTCACTACTTCCTCTGAGTCTAGCGCATGTATGCCTCCCGAGCAAGAAGAGAATGGACCAAATGGATCAGTGCAAAACAGTGGTAGGAATGACAAGGGGTATCACCCATTGGCCTCTGAGACAAGAGTTGAGAAGTTGAATGTGATGGAGCAAGATGCATATCAGAGACTGGAGAGGAGTTCTTCCTATGTGTCTTCCATGGATGTGTTGTCAGAAGTCGAGAGTCCAGTAAATGGTCCTACCTCTATTACAAGCATTCCCCAGTATGGATCAGTGACTACCCCAAAGCAGGTTGCTTCTTTGAATGCTGATTCTTCTTCCCCAGTCTTAGAGGAAAATTTGGATCAGGAGGGTTGTGAAAAAGTTGCCAATTCTAGACAAATGGGTACAGTTGTTCAAATAAACAGTAATGAAAGTGATTTTGACATCTATTCTAGAACCACTACATCTCTTGGTAGTGATTACCTCAACAAGAATCCAAGCATTGGTTTGGAAACCAAAGACAACTTAAGTGAGATATGTGAGGAAGTTGATAAAAGTCTTGTGCAGGAGGGGGGTTCCATTAAGGATAAGCATGGAAATGAAATGTTGCATTTTGATAAGCTGTATCTTGTTGAAGATGAATCAGTGACTCAATATGCAAAAGATCAAGCTTTATTGAGTAGCAATTTATATTCTTTAGGTGAGTCAGATAATGGTTTGAAATGCAATTTTCTGAAAAACGAAAGATTAAAGCATGTTAAGTCTGTAAGGTCATCAGCAGACTCAGTTAGGAGTATTGGGTTTGGTTCACTTGGTAACAATCATCTCACTGAGGTAAAGGAAAATGGTGTTAATGGAGATGTCCAAAATAATGGAGGGAACATTCAAAACAGTGACAGAAAAGAGGCCAAGGTTTATCCAAGGGAAGCTAAAAAGACCATTTTAGACAGCAAGATTGAACAGTTGGAAAACAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATTTTCAGTAGTTGCCGAACATGGAAGCTCAATGAGTAAGGTTCATGCCCCAGCTCGGCGCCTTTCCAGGTTGTACCTTCATGCTTGTAAAGAAAATATTGAGGCAAGAAGGGCTGGGGCTGCTAAAAGTGCTGTTTCAGGATTAGTCCTTGTTGCGAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGCTGTCTAATTCTATTGTGCTGAGAACAATTATAAGCAAAACTACCAAAAACATGACACCATCTAATCCTTCTGGATCTAGAACATGGAAGAATGGAGAGGCCAAAGTTGGAAATGTAACACAACATCTAATATGGAGGGGGTTCTCTCCAAGGAAAAACGATTATACAGCTTCTGAGAATGGGGGTATAGGTAAGTGGGATGACCTAAATGTGTTCACCTCAGCATTGGAAAAGGTAGAAGCTTGGATCTTTTCTCGCATTGTGGAATCTATTTGGTGGCAGTCTTTGACTCCATGTATGCATCTTTCTGATGCAAAGGTCAATCGTAAAGATTCTTCAAAAAACTATAAAAGTATGTCTAGCTCATGTGACCAAGAGCAGGGAAATTTATCGCTAGATATTTGGAAGAATGCTTTTAGAGAAGCCTGTGAAAGGCTATGTCCTATCCGAGCTGGAGGGCATGAGTGTGGTTGTTTGTCTGTGCTGCCTAGATTGATAATGGAGCAGTGTGTGGCAAGATTGGATGTTGCAATGTTCAATGCCATTCTTCGGGAATCTAATGATGATATTCCAACCGATCCTGTATCTGATCCCATCAGTGATCCTAGGGTTCTCCCCATTCCACCTGGTAAATCAAGCTTTGGATCTGGTGCACAACTAAAAACAGCGATCGGTAACTGGTCACGATGGCTGACTGACCTATTTGGGCTGGATGACGATGATTCTCTTGATAGAGATGCTGATGACCTTGGCAGCAATGATGGAAGTCAAAATACATCCTTCAAATCCTTCCATCTTCTTAATGCATTAAGTGACCTCCTGATGCTTCCTAAGGATATGCTCTTAAGTGCATCCATTAGGAAAGAGGTGTGCCCTATGTTTAGTGCACCTCTAATCAGGAGGATACTAGACAATTTTGTCCCAGATGAGTTTTGTCTTGATCCAATTCCTGATCAAGTTTTTGACGCTCTGGACTCACAGGATGATCTTGATGATGGAAATGAGTCCATCAACGATTTCCCATGCAATGCAGCTCCCATTGCATATTCACCTCCACCAGCAGCTACCATTACTAGCATTACGGGGGAGATTGGAAGTGAATCTCAGCTTAGAAGAAGCAAATCTTCCGTTGTTAGGAAGTCATACACCAGTGATGATGAGCTCGATGAACTAAACTATCCATTATCTTTAATATTGAATAATGGCTCCTCCGCACCACCATCAACAAAGTCCAATTGCAAGTGGAAAGAGAGTCGCGATGAATCTTCCATTAGATTTGAACTTCTCAAGGATGTTTGGATGAACAGTGAATGA 3180 0.4189 MKGKNRRSGGAVHMEYLIHIQEIKPWPPSQSLRLLRSVLIQWENGERASGSTGIVSPSLSPSSVAGEGKLEFNESFKLPVTLSRDMSIRNSTAEVFQKNCLEFHLYETRRDKTVKGQLLGTAIIDLADCGVLRETLSIRTPLNCQRNYRNTDQPLLFIQIEPVEKSYPRSSLKDSLSKGVPKDNNGNESVSALMNGEYAEEAEIASFSDDDVSSHSSVAAVTTSSESSACMPPEQEENGPNGSVQNSGRNDKGYHPLASETRVEKLNVMEQDAYQRLERSSSYVSSMDVLSEVESPVNGPTSITSIPQYGSVTTPKQVASLNADSSSPVLEENLDQEGCEKVANSRQMGTVVQINSNESDFDIYSRTTTSLGSDYLNKNPSIGLETKDNLSEICEEVDKSLVQEGGSIKDKHGNEMLHFDKLYLVEDESVTQYAKDQALLSSNLYSLGESDNGLKCNFLKNERLKHVKSVRSSADSVRSIGFGSLGNNHLTEVKENGVNGDVQNNGGNIQNSDRKEAKVYPREAKKTILDSKIEQLENKIKMLEGELREAAAIEAALFSVVAEHGSSMSKVHAPARRLSRLYLHACKENIEARRAGAAKSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKNMTPSNPSGSRTWKNGEAKVGNVTQHLIWRGFSPRKNDYTASENGGIGKWDDLNVFTSALEKVEAWIFSRIVESIWWQSLTPCMHLSDAKVNRKDSSKNYKSMSSSCDQEQGNLSLDIWKNAFREACERLCPIRAGGHECGCLSVLPRLIMEQCVARLDVAMFNAILRESNDDIPTDPVSDPISDPRVLPIPPGKSSFGSGAQLKTAIGNWSRWLTDLFGLDDDDSLDRDADDLGSNDGSQNTSFKSFHLLNALSDLLMLPKDMLLSASIRKEVCPMFSAPLIRRILDNFVPDEFCLDPIPDQVFDALDSQDDLDDGNESINDFPCNAAPIAYSPPPAATITSITGEIGSESQLRRSKSSVVRKSYTSDDELDELNYPLSLILNNGSSAPPSTKSNCKWKESRDESSIRFELLKDVWMNSE 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01077 1059 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 15 129 IPR019448 -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 170 190 - -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 209 252 - -
Phco2g01077 1059 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 463 1056 IPR021827 GO:0005643
Phco2g01077 1059 ProSiteProfiles C2 NT-type domain profile. 4 164 IPR019448 -
Phco2g01077 1059 Coils Coil 526 553 - -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 497 517 - -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 168 190 - -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 207 255 - -
Phco2g01077 1059 MobiDBLite consensus disorder prediction 497 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01077 Phco-Chr2 16972566 16978782 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01077 2 16972566 16978782 Phco2g01077 2 16972566 16978782 ECH
Phco2g01077 2 16972566 16978782 Phco5g01420 5 49606087 49612027 PCT