Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00812 ATGGATCAACGTGAAGAAGGCAAACAACCATCCCAGAAAACACCATCACACAACCCAGTTGATAGTTCAGACAATATTGGTCTAGAAAATGGTTTGCAGGAGCAAAGTGGCACATTCACAACGTTGGCATCATTAGAAAGTGGAAGTGAGAGTGAGTCCTCTTATAATGACCATGATGAGGATTCTGACTTTTTCCTGAGCCAAGAGTTTGAATCCGAACTTCAGTTTCTTGAGAGTGAAGGAAGCAATGACGACGACGACGATGATGATGAGGAGGAAATGGAAGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGACTTTATAGGGCAAGAGAAGAGAGGGTTATCAGCAAATGAAATTTGTTCATGTCTGCATTCTCACACTTACCATTATGCTGAAAGCAAAAGTGGAATAAATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTATCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCTATATGTAACACTGAAATTTCTGCTCCCAAGATGGTTAGTTAA 603 0.4063 MDQREEGKQPSQKTPSHNPVDSSDNIGLENGLQEQSGTFTTLASLESGSESESSYNDHDEDSDFFLSQEFESELQFLESEGSNDDDDDDDEEEMEEDEIDVDELTYEELIELGDFIGQEKRGLSANEICSCLHSHTYHYAESKSGINLCVICQVEYEEGEALVSIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00812 200 SMART ring_2 149 189 IPR001841 -
Phco2g00812 200 Pfam RING-H2 zinc finger domain 148 190 IPR024766 GO:0008270
Phco2g00812 200 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 194 IPR033276 GO:0004842|GO:0016567|GO:0046621
Phco2g00812 200 MobiDBLite consensus disorder prediction 12 51 - -
Phco2g00812 200 MobiDBLite consensus disorder prediction 78 99 - -
Phco2g00812 200 FunFam E3 ubiquitin ligase BIG BROTHER-related 115 196 - -
Phco2g00812 200 SUPERFAMILY RING/U-box 108 196 - -
Phco2g00812 200 MobiDBLite consensus disorder prediction 1 99 - -
Phco2g00812 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 196 IPR013083 -
Phco2g00812 200 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00812 Phco-Chr2 8990236 8990838 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00812 2 8990236 8990838 Phco2g00812 2 8990236 8990838 ECH
Phco7g01252 7 11104105 11104872 Phco2g00812 2 8990236 8990838 PCT