Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00616 ATGTCATCAAGCCGAAGAAGGAAGACGAAGAATATGTTTGGAATATGTGGTGTTGATGACGTGAACGATGTAAATGAGAAAGAGATTGAGGCAAGAGAAGATGGCAGCCAATACAGTCTCACAGGTGTTCTTCTTCCTTCTCTCGGTGCCACTGCCATCAACAACGGGAGTCGCAGACCAGTTCTTCATCGCAATATCATCTCTCCATATAATCGTCGTTACAGAATATGGACCAAGTTTCTGCTAATATTGGTGTTCTACACAGCTTGGATGTGTCCATTTGAATTTGGTTTCCTTGAAAAATCAAAGGGTGCACTAGCTGTAACCGACAATGTAGTAAACGGGTTTTTTGCCATTGACATTGTACTCACCTTCTTCGTAGCTTACCTTGATAAGTCTACTTATCTATTAGTTGATAACCACAAACTCATTGCTTTGAGATATGCTAAATCTTGGTTGATTTTGGATGTCATTGCTTGTGTTCCATATGAAGTTGTTCGTAGTTTGTTGCCACCTCCTCTTCAGTTCTATAGCTACTTAAATATTCTCCGACTTTGGCGTCTCCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGACAGAAGTTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTATTCGCAGTGCATGCTGCTGCATGCTGTTTCTATTTTCTTGCTGCACGAGATGATCCACAAAAGACATGGCTTGGACTTGTTCCTGAGGCCATCGACCAAAATATATGGGGAAGATATGTAGTAGCTGTATATTGGTCCATAGTCACCCTTGTATCAGTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAAATGGTATTTAGCATTTTGTATATGCTCTTTAATCTTGGACTCACCTCATACTTGATAGGCAACATGACCAACATGGTTGTCCACTGGACTGAAAGAACTAAGAGATATAGAGACACAGTCCAATCTGCTTCAAATTTTGCCCATAGGAATCGCTTGCCTATTCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAGGTATAGAACTGATTTAGAAGGACTACAACAACAAGAGATCATTGATTCCCTTCCAAAAGCCATTCACTCTAGCATCTCACACTACCTATTCTTTTCACTTATTGACAAAGTGTACTTATTCCATGGAGTGTCAAATGACCTACTTTTTCAACTGGTCGCAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGACTTTTATATATTCATTACAGGAGCTGCTGATCTTATCACTCAAACGAATGGAATAGAACAGATTGTTGGAGAAGTAAGGCCAGGAGATGTAGTTGGTGAAATAGGAGTCTTATGTTATAAGCCACAACTGTTCACAGTCCGGACCAAGAGATTGAGCCAGATCTTACGTTTGAATCGGACCACATTTCTAAATCTTACTCATTCAAATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCATCATTTACATGAACTAGGGAATCCACTAATGGAAGAAATTTTGGCAGAGGCAGAAGCAATGTTGGCTAGGGGCAAAATGGATTTGCCAATTAGTTTATTGTTTGCAGCAAGTAGAGGTGATGATATTTTGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAATGAACCAGATAAGAATGGAAAGACAGCAATGCATATTGCAGCTTGCAAAGGCAATAAACATTGTGTAATTGTGCTTCTAGAACATGGAGCAAATCCCAACATCAAAGACATGGAAGGAAATTCGGCACTATGGGAAGCAATTAAGGGTGGACATGAAAGTGTGATGAGAATTCTTGTAGAAAATGGTGCAGAAATATCATCTAATAATGTAGTTGATTATGCAAGATTGGCCATTGAGAAAAACAACTTAGAAATTGTGAAGGAGATTATGCAACGTGGTGGGGATGTGACACAATGTAGTCATAAAATGACGACACTACTCCATGCTGCAGTGTGTGAGGGAAATGCTGAAATAGTGAAGTACCTTATAGAGCTAGGAGCAGACATTGATAGACAAGATAGTGTTGGGTTAACTGCAAGATCTTTAGCAGAGCATCAATGTCATGAAGAAATACTAAACATGTTTAAGACAATTGGACACAAGAATAAAACAAATGGTATTCCTCAAATTTCAACCTTTGTTGGTAGGTGTCAAAGTGAACCCACAATACCAGCCATTCCCCAACCCAACAAACCACCTAATAAAGAACTCACATGGTTTGATAATCATCAAAGAAGAAGGGTCAGCCCTTTCCACAATTCCTTTTTCGGAATCATGTCATCTGCAAATTATGGTAAAAAAGATTCAACAACAGCATCTCCAACCAGTCAAAGTATTAAAGAGGAAGTGATACCCAGAATAACACTTAGTTGTCCAGAGAAAGGTGAAGATGCTAAGAAGCTTCTCTTTTTGCCAGATTCTATAAACGAATTGCTTCGTGTTGGTGCTAAAAAATTTGATTGCTCTCCCTCCAAAATATTGACCGTAGAAGGAGCTCAAATTGAAGACATAGATGTTATAAGAGATGGTGATCATCTTCTTCTTGTATAG 2619 0.3879 MSSSRRRKTKNMFGICGVDDVNDVNEKEIEAREDGSQYSLTGVLLPSLGATAINNGSRRPVLHRNIISPYNRRYRIWTKFLLILVFYTAWMCPFEFGFLEKSKGALAVTDNVVNGFFAIDIVLTFFVAYLDKSTYLLVDNHKLIALRYAKSWLILDVIACVPYEVVRSLLPPPLQFYSYLNILRLWRLHRVSAMFARLEKDRSYSYFWVRCCKLTCVTLFAVHAAACCFYFLAARDDPQKTWLGLVPEAIDQNIWGRYVVAVYWSIVTLVSVGYGDLHPVNTKEMVFSILYMLFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQSASNFAHRNRLPIRLQEQIFAHLLMRYRTDLEGLQQQEIIDSLPKAIHSSISHYLFFSLIDKVYLFHGVSNDLLFQLVAEMKAEYFPPKEDVILQNEAPTDFYIFITGAADLITQTNGIEQIVGEVRPGDVVGEIGVLCYKPQLFTVRTKRLSQILRLNRTTFLNLTHSNVGDGTMIINNFLHHLHELGNPLMEEILAEAEAMLARGKMDLPISLLFAASRGDDILLNQLLKKGSDPNEPDKNGKTAMHIAACKGNKHCVIVLLEHGANPNIKDMEGNSALWEAIKGGHESVMRILVENGAEISSNNVVDYARLAIEKNNLEIVKEIMQRGGDVTQCSHKMTTLLHAAVCEGNAEIVKYLIELGADIDRQDSVGLTARSLAEHQCHEEILNMFKTIGHKNKTNGIPQISTFVGRCQSEPTIPAIPQPNKPPNKELTWFDNHQRRRVSPFHNSFFGIMSSANYGKKDSTTASPTSQSIKEEVIPRITLSCPEKGEDAKKLLFLPDSINELLRVGAKKFDCSPSKILTVEGAQIEDIDVIRDGDHLLLV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00616 872 SUPERFAMILY Ankyrin repeat 502 722 IPR036770 -
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 87 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 284 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 PRINTS EAG/ELK/ERG potassium channel family signature 110 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco2g00616 872 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Phco2g00616 872 CDD CAP_ED 390 495 IPR000595 -
Phco2g00616 872 Gene3D - 536 720 IPR036770 -
Phco2g00616 872 Pfam Cyclic nucleotide-binding domain 410 494 IPR000595 -
Phco2g00616 872 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Phco2g00616 872 SMART ANK_2a 665 694 IPR002110 GO:0005515
Phco2g00616 872 SMART ANK_2a 601 630 IPR002110 GO:0005515
Phco2g00616 872 SMART ANK_2a 568 597 IPR002110 GO:0005515
Phco2g00616 872 SMART ANK_2a 632 661 IPR002110 GO:0005515
Phco2g00616 872 SMART ANK_2a 535 564 IPR002110 GO:0005515
Phco2g00616 872 SUPERFAMILY Voltage-gated potassium channels 69 311 - -
Phco2g00616 872 Gene3D - 77 311 - -
Phco2g00616 872 SMART cnmp_10 390 507 IPR000595 -
Phco2g00616 872 FunFam Potassium channel KAT2 378 514 - -
Phco2g00616 872 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Phco2g00616 872 Gene3D Jelly Rolls 356 513 IPR014710 -
Phco2g00616 872 SUPERFAMILY cAMP-binding domain-like 315 510 IPR018490 -
Phco2g00616 872 FunFam Potassium channel KAT3 76 312 - -
Phco2g00616 872 ProSiteProfiles Ankyrin repeat region circular profile. 601 632 - -
Phco2g00616 872 ProSiteProfiles KHA domain profile. 809 872 IPR021789 -
Phco2g00616 872 PANTHER POTASSIUM CHANNEL AKT1 36 871 IPR045319 GO:0005249|GO:0006813
Phco2g00616 872 Pfam Ion transport protein 75 317 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phco2g00616 872 ProSiteProfiles cAMP/cGMP binding motif profile. 390 509 IPR000595 -
Phco2g00616 872 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515
Phco2g00616 872 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515
Phco2g00616 872 ProSiteProfiles Ankyrin repeat region circular profile. 665 696 - -
Phco2g00616 872 Pfam Ankyrin repeats (3 copies) 540 631 IPR002110 GO:0005515
Phco2g00616 872 Pfam Ankyrin repeats (3 copies) 639 696 IPR002110 GO:0005515
Phco2g00616 872 Pfam KHA, dimerisation domain of potassium ion channel 809 871 IPR021789 -
Phco2g00616 872 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00616 Phco-Chr2 6099903 6107918 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00616 2 6099903 6107918 Phco2g00616 2 6099903 6107918 ECH
Phco2g00616 2 6099903 6107918 Phco7g00785 7 6084288 6090456 PCT