Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01676 ATGGCACAACGTTCTCATGTACCGAAATTTGGCAATTGGGATAGTGGAGATAATGTTCCTTACACAGCATATTTTGACAAGGCCCGGAAAGGTCGAACTGGTGCAAAAATAATAAATCCAAATGACCCTGAGGAAAATTCTGATTTAGGTCTTGACAATCCATCATCTGAGCACCTACCTCCATCCAAACCAAGAGTTAGTTCAGAGGATCCATCTGGAAAGGGATCATTGCATTTGGAAGATGATCCTAAGCCTTTCATCGACTCTCCAGCTCGTCATGACAATGTAAGCAATAGGAGTGGCAGCAGAAGCCACGGAGTACCTTCTGCTGATAACCGTAGAAGGCCTTCTATGCAAAGTGCTGGCTCTGAGCACAGCATTGACCGTTCTCCACTTCATCGCCAGGCCAGACCCCCAGGCAGAGACAGTCCTCAGTGGGAACCAAAGAATTCATATGACAACATCCAGGGAACACCTGGGAGATCTCGGTTAAGACAGGCTAACCGGGGAGATGAAACACCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAACAACCCAGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTTAGGGAGGAGAGACAGGGAGGGCCAGCACAAGATGCGCCGGGCACGCTTAATGGTAGACCACAACAGAACAGGGGCCAATTCAATGATGACAAAGTCCAGTGTTGCTGCTTTGCCTGGGGCAAAAAATGA 741 0.4777 MAQRSHVPKFGNWDSGDNVPYTAYFDKARKGRTGAKIINPNDPEENSDLGLDNPSSEHLPPSKPRVSSEDPSGKGSLHLEDDPKPFIDSPARHDNVSNRSGSRSHGVPSADNRRRPSMQSAGSEHSIDRSPLHRQARPPGRDSPQWEPKNSYDNIQGTPGRSRLRQANRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQGGPAQDAPGTLNGRPQQNRGQFNDDKVQCCCFAWGKK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01676 246 MobiDBLite consensus disorder prediction 1 191 - -
Phco1g01676 246 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 174 209 IPR008700 -
Phco1g01676 246 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 32 IPR008700 -
Phco1g01676 246 MobiDBLite consensus disorder prediction 206 231 - -
Phco1g01676 246 MobiDBLite consensus disorder prediction 74 89 - -
Phco1g01676 246 MobiDBLite consensus disorder prediction 93 126 - -
Phco1g01676 246 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 227 IPR040387 -
Phco1g01676 246 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01676 Phco-Chr1 54764692 54770042 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01893 3 43297873 43307066 Phco1g01676 1 54764692 54770042 PCT