Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01277 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGGGCCTGCTTACAGATGCGGTTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTTTATGGTGTGATCTTTCCCTCTTTAGTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAACATTTATGTGCTACAAAGTACATGGCCAAAGATATAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTCGAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAGCAATGAGATGAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTTTGTCAGATCCTTCACTTATGTCTTATCCTCTGCGCTAA 720 0.4028 MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLVQLHRGITDVEERKQKHLCATKYMAKDIRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRDSLRRVNSGDLWIYLNSNEMNDLASINKENLKRLFTYVDKLPLILSDPSLMSYPLR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01277 239 ProSiteProfiles Zinc finger RING-type profile. 145 183 IPR001841 -
Phco1g01277 239 FunFam RING/U-box superfamily protein 126 192 - -
Phco1g01277 239 SUPERFAMILY RING/U-box 127 187 - -
Phco1g01277 239 ProSitePatterns Zinc finger RING-type signature. 160 169 IPR017907 -
Phco1g01277 239 Pfam Zinc finger, C3HC4 type (RING finger) 142 188 - -
Phco1g01277 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 215 IPR013083 -
Phco1g01277 239 PANTHER RING FINGER PROTEIN 41, 151 3 234 - -
Phco1g01277 239 SMART ring_2 145 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01277 Phco-Chr1 22717145 22720909 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02226 3 48621970 48624959 Phco1g01277 1 22717145 22720909 PCT