Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01266 ATGAAGTCTCTCACCAGTTCTTGTTCTAAGTCCATCGTCCACACTCTAGGATCTTTGTCTCCCAGAGTTGCCATTCGGGTTTCTGATAGACCCGAATTCTTCTTCTCTCCGCGTTCAAGGAGCGGCAAGAAGGGTTGCAACGTATGTCTCCTCAAACTTGTTCCAGTCAAGGGTATTTTTCCAGTTCATGCAGTGCCATCAAAAGACCAGGTGAACCCGGAAAATGCAGAACCTGAAGCTGAAAAAATTGAACAAACAAATGAATCGAAGTTTGTTCATGTAACATTTGAGTTGCAAAAGAATTGTGACTTCGGAGAACAGTTTCTTTTAGTTGGAGGTGATCCTATGTTTGGTTCATGGGACCCTTTAGAAGCATTACCGATGACATGGTCTGAAGGACATGTATGGACTGTTGAGAAGGATATACCTGTTGGAAAGTCAATCCAGTACAAGTTCATATTGAAAGGAAAAGAAGGTGATATTTTTTGGCAGCCAGGACCAGATAGATTTGTCCGCATTTGGGAAACTGTGAAGAGAATAACTGTTTGTGAAGATTGGGAGAATGCAGATCTTCAGAAAATAACAGAGGATGCTCCCCTTGCTGAACCAGATAAGGAACCCCATATTGACTCAGAAGTGTCTACTTCTGCTGAAATTTTGGATAACCCTCAAATCGAACTGGATTCCAATGCATCTGAAATACAGGAGACACCACTTGCTGAACCAGTCACTAATAATAATAGTTCTACCTGGATTGGAGTCCCTTTGGTTATTGTTGCAGACGATTTACTTTCCTCCGAGGATGTCATGAAGCGTATAAAAAGTAAATGGAATGAAAAGAAGATGCTTCAATGCATTGAAGAATCAGCTGACAGTACAGTACATGATCTTGGACACAATGGAAGTGCTGAATCACTCGAGAATCAGGAAGGGACAATTGTGGAAAGCAGCTTAGTTGATTCTGAAGGCGGTCCTGTTCTTGTACCTGGCTTAACTGAGCCAACTAATGAGGCAAGCCAAGGTGAAGTTGAAGAAAAGACTACCATGGACATTCCAGTTGAAGCTTCTGAAACTGATCAGGATCAGGATCAGGATCAGGATCAGAATCCTCCCGAGTTCAGTATGGAGCAAGAAACTGATGTGCCAGAGCTGCTTTACAATGAACATGAACAGAACCATTTGTCCCCAGATACAGATACAGAAGACAGGCCAAACTATGAACCCGATGATGGCACTCCCTTGCAAAATCACATCAAATGGGGCAACGAAAGGGTAAAGAAGTTTCTAGAAGAACTAGGATTCCTTTGA 1308 0.4243 MKSLTSSCSKSIVHTLGSLSPRVAIRVSDRPEFFFSPRSRSGKKGCNVCLLKLVPVKGIFPVHAVPSKDQVNPENAEPEAEKIEQTNESKFVHVTFELQKNCDFGEQFLLVGGDPMFGSWDPLEALPMTWSEGHVWTVEKDIPVGKSIQYKFILKGKEGDIFWQPGPDRFVRIWETVKRITVCEDWENADLQKITEDAPLAEPDKEPHIDSEVSTSAEILDNPQIELDSNASEIQETPLAEPVTNNNSSTWIGVPLVIVADDLLSSEDVMKRIKSKWNEKKMLQCIEESADSTVHDLGHNGSAESLENQEGTIVESSLVDSEGGPVLVPGLTEPTNEASQGEVEEKTTMDIPVEASETDQDQDQDQDQNPPEFSMEQETDVPELLYNEHEQNHLSPDTDTEDRPNYEPDDGTPLQNHIKWGNERVKKFLEELGFL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01266 435 SMART CBM_20_2 91 183 IPR002044 GO:2001070
Phco1g01266 435 CDD CBM20 94 186 - -
Phco1g01266 435 SUPERFAMILY Starch-binding domain-like 89 185 IPR013784 GO:0030246
Phco1g01266 435 Gene3D Immunoglobulins 89 187 IPR013783 -
Phco1g01266 435 MobiDBLite consensus disorder prediction 317 418 - -
Phco1g01266 435 Pfam Starch binding domain 92 178 IPR002044 GO:2001070
Phco1g01266 435 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 86 188 IPR002044 GO:2001070
Phco1g01266 435 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 87 187 - -
Phco1g01266 435 MobiDBLite consensus disorder prediction 382 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01266 Phco-Chr1 22236444 22239580 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02233 3 48690971 48692144 Phco1g01266 1 22236444 22239580 PCT