Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00623 ATGGCTTCGGAGAATGTGAAGACTGGGGAATCCGCCGTCACCACCATCGTCAACCTGGCCGAGGAGGCCAAGCTGGCCCGAGAAGGCGTTGTCAAGGCTCCTAGCTACGCGTTCGCCACCATCTGCAAGTCACTCGTCGCTGGTGGTGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCTCTGGAACGGTTGAAAATTTTGCTACAGGTCCAAAACCCTCATAACATTAAATACAATGGAACAATACAAGGCCTAAAATATATATGGAGAACTGAAGGTCTCCGTGGACTTTTCAAAGGGAATGGTACTAATTGTGCTCGAATTGTCCCTAATTCTGCTGTGAAGTTCTTCAGTTATGAACAAGCTTCTAAAGGTATACTGTACATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTCTTCTACGTCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCCGAATTACTGTGCAGACTGAGGCATCACCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACAGTGCTTAGGGAAGAAGGTCCTCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTGTATGAGTCTCTAAAAGATTGGTTAACTAAATCCAACGCATTTGGTCTTGCTGATAATTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGACGTTATTCGTCGTAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAAGCAAAGTCCCACTTGAATACACTGGAATGGTTGATGCATTCAGGAAAACTGTTCAGCATGAAGGATTCGGTGCATTATACAAGGGTCTTGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCAATTGCATTTGTAACATACGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTAA 1068 0.4551 MASENVKTGESAVTTIVNLAEEAKLAREGVVKAPSYAFATICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYQQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLTKSNAFGLADNSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRSKVPLEYTGMVDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00623 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Phco1g00623 355 SUPERFAMILY Mitochondrial carrier 41 342 IPR023395 -
Phco1g00623 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Phco1g00623 355 FunFam Mitochondrial substrate carrier 37 349 - -
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Phco1g00623 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Phco1g00623 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Phco1g00623 355 PANTHER SOLUTE CARRIER FAMILY 25 40 349 - -
Phco1g00623 355 Pfam Mitochondrial carrier protein 41 126 IPR018108 -
Phco1g00623 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Phco1g00623 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Phco1g00623 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00623 Phco-Chr1 5556570 5564934 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00623 1 5556570 5564934 Phco1g00623 1 5556570 5564934 ECH
Phco11g01254 11 9414741 9422889 Phco1g00623 1 5556570 5564934 PCT