Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00592 ATGGCACCAAGGAACAGTCGCGGAAAGGCCAAGGGTGAGAAGAAAAAGAAGGAAGAAAAGGTTCTTCCAGTTGTCATAGACATCACAGTGAAGCTTCTTGATGAAACTCATGTTCTCAAGGGAATTTCAACAGACAGAATAATAGATGTTCGTCGGCTTTTATCAGTGAATACGGACACATGTTATGTCACAAATTTTTCCCTGTCACATGAGGTAAGAGGGTCACGTCTTAAGGACACGGTGGACGTGTCCGCACTGAAGCCCTGCCTCCTCACTTTAGTTGAAGAGGAATACAATGAAGAACGAGCAGTGGAGCACGTGCGAAGACTCCTCGACATCGTCGCCTGCACCACGAGCTTCGGTCCGTCGCCGCCTCCGTCACCGAAGGTCGCCGCCGGCACAGCCACGAAGTCCGGCAAGTCCGAGGTCCCGCCTGCGAAAGATGCGGCGGTGACGGTTGCGGACGTGGACGGCGAGATAAGCCACTCGTGCCCTAAGCTGGAGAACTTCTACGAGTTTTTCTCTCTCTCGCACCTCACCGCACCTATACAATATGTGAAGAAAGGTTCGAGGCGGCGCGTGGAGGAGATATCGGAGGCGGATTATCTGTTCTCGCTGGATGTTAAGGTGTGCAACGGGAAAGTGGTGCACGTTGAGGCTTGCAGGAAGGGATTCTACAGCGTTGGGAAGCAGCGGATTCTGTGCCATAATCTGGTTGATTTGTTGAGACAGATTAGCAGAGCTTTTGATAATGCTTTCGATGACCTCTTGAAGGCATTTTCAGAGCGTAACAAGTTTGGGAATCTCCCATATGGCTTCAGAGCCAACACGTGGCTTGTTCCTCCTGTTGCTGCACAGTCACCCTCATCTTTTCCTCCTCTTCCCGTGGAGGATGAAACATGGGGAGGAAATGGTGGTAGTCTCGGAAAAGACGGAACGTATGATTTGATTCCTTGGGCCAAAGAGTTTTCATTAATTGCATCTATGCCTTGCAAGACAGCAGAAGAAAGACAAGTACGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTTGATGTTTCTATTTTCAGAGCAATAGGGGCTATTAAACATGTTATGGAAGAACCCAATGTTAGTTGCTCCGTTGTAGAAAATAGTGTTGTTTACACTGAGAGAGTTGGCGACTTGAGTATCAAGGTCTTGAAAAATGGTTCTATTGCAAGCTGTAAGATTGATACTAAAATTGATGGAGTTGAAGCTACTGGAGTAAATCAAAAGGATCTAATAGAACGAAATCTACTGAAAGGCATCACTGCTGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTCATTAATGTAAGATACTGTGGTTATGTGGTTGTTGTGAAAGTTGAGGGTGGAGTCAGGGAAAATGTTGACTCTCCATCGCAACAAATTATTGAATTGTTTGATCAGCCAGAGGGTGGTGCCAACGCACTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACTCCACCAGAAAACAATAAACCAATGATTCAGATACAAACGTTTGAGAGTGAAGAGACGGGTGCTTCTCATTCTTTTGTGGAGAAGCTGATTAAAGAAAGTCTTGCTAAGCTTGAGGAGGAAGAACTTGGTATGGACTATTTTGTAAGATGGGAACTTGGAGCTTGCTGGATGCAACATTTGCAAGACCAAAGTAATAATACAGAAAAAGATAAGAAACCATCCTTGGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGTCTTGGGAAACCCCTTAAATCCCTTAAGAATTTTAAAAAGAAATCTGATTCAAGCAATACTACTTCTGCATCTGAATATTCAAAATTTAGTCGGGAGTCCCAAAGCCCTTCATTGCCCTCAATTGAATCGCAACATGAAACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAAGGATGTTATCTGAGGAAGCTTTTACCCGATTTAAAGAATCAGGAACAGGACTTCACTGCAAGTCTATGCATGATTTGATTGACTTATCTCAAAAATATTACACAGACTTTGCTCTCCCAAAATTGGTAGCAGATTTTGGCTCATTAGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTAGGGGTCTAAGAATGCGTTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACATGTGCAGTCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCCTGCGGGCAGTAATTTCTTCTGTTAACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCTTTGAATTTGCTGCTCGGTATTCCTGGAAATAGAGATTCAGATAAATCACATGAAGTTCATCCCTTGGTGTGGAAATGGCTAGAGGTGTTTTTGAAAAAGCGATTTGATTGGGATCTTCACAGGTTGAATTACAAAGATGTGAGGAAATTTGCAATTCTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCTCCTATTCCCTTCCACAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAGCAAGCTGCATGCTCATCTGCAGATGGAAGGCAGCTCTTGGAGTCATCCAAAACTGCTTTAGACAAGGGAAAGCTTGAGGACGCTGTTACCTATGGCACAAAGGCTCTTGCTAAGCTAGTAGCAGTTTGCGGTCCCTACCATCGAATGACAGCAGGAGCATACAGCCTGCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATATATCAACAAAAAGCTTTGGATATCAACGAGAGAGAGTTAGGTTTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTACAACACACAGAGCTGGCTCTGAAGTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCTGCTACTTACATTAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTACATGTCGCTCTCAGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGCGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCATTGAGCGTGCAGCATGAGCAAACAACTTTGCAAATTCTGAGGTCAAAACTTGGTCCTGATGACTTGCGAACACAGGATGCTGCGGCTTGGCTGGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATTTGAGTGTGTCAGATTTGCTTGACTATATTAATCCGAATCATGATACTAAAGGGAGAGATGCAGCAACAAAGAGAAGAAGCCAGATAACAAAGGTGAGAGCGACATCCTACCTTAACCTTAGCATGTCAAGTTCCGATGAATCTTCAAAAGAAATTCCTAAAGAGGCTTCAGATGAAGAGGTACAAATACCTCTAGCTGAAGGTAGTGCAGATTCTGAGCAGGAAAGCAACTCTGGACCTGACTCAGAACATACTATTTTAAAACAAATATCAGATGAAAAGCCACAAATTTATGATGAAATATTGTCTGAAGCACATGCTGAAGATGGATGGCAACCAGTTCAAAGACCAAGATCAACTGGTTCATATGGCCGGAGACTGAAGCAGAGACGGGCAACACTTGGCAAAGTTTATAGTTATCAAAAGAATGTGGAAGTTGGCACAGAATCTCCTTTTGTAAGGAATGCTAGTCCAAATAGTAGGTATTATTTCTTGAAGAAGCGGCCAATTTCCCATGGGGGTTATACAGGTGGTGATCATACAGTAAACATCACCCAAGGCCCTAAATTTGGAAGGAAAGTAGTTAAAGCTCTTACATACAGGGTCAAATCCATACCCTCAACTTCCAAGGCTAGTGCAAATGAGACGTTAGAAACAGGTGACAAGTTGTTTGGTTCTCTTTCAGAACCTGATCCAATTGATGTTAATCCAGTTAAGAATTCTATAGTTAGTCTTGGAAAGTCTCCTTCATACAAGGAAGTGGCCTTAGCACCTCCAGGGACAATCTCCAAGTTTCAGGTCTATAATCCTCCAAGTGAGATTTCTGTTAGCTGTGAACATGATGGTGGCAAACCTGAAGAGGAAGATATTGAAGCTAATAGGAATGTTAATCCAACCCCGGCAGAGGCAAATGATATGGATAAAGGCAAGAATAATAATTCTGTTTCTAGTTCTGTTGATGGTTCACAGGATGATACTGGAGTTACTACTGAGGGGAAAGAGGAAACTCAGTTGATTGTTGCTGTGCAAGATAAATGTATGAGTGCTGAGGGGAAATTAGGAGATGTTGAAGCTCAAGGAGCAATCGATAATAGCAGATTGATTCAGGCAGTAGATGATCACGTGGATTCTTCCAAAAAAGAACTCGATGCAAGTAATTTAGCTGGCAGTTTGGAACCTAGTGATAATACAAATCCCATTTCCCAAGGTGGCAAGGATTTAAGGGTCAATGTGTCATCATTAAATCAGAGTCACACTGGGGGCATCCCGTATAAGAAATTGTCAGCATCTGCAGCTCCATTCAACCCATCGCCTGCCATTCGCACTCCATCAATTGCCATGAATATGACTCTTCCTTCTGGTCCCAGTGTAGTGCCTGGAATTGGCCCCTGGCCAGTAAACATGAACGTTCATCCTGGACCTACTACTGTGCTACCTGCAGTTACCCCCATGTGCTCCTCTCCTCACCATGCATATCCATCGCCTCCAACTACACCAAACATGATGCAACCACTGCCATATATGTATCCTCCTTATACTCAACCTCAATCAATGCCACCTGGCAGCTTTCCGGTCACTAGTAGTGCCTTTCATGCGAATCATTTTACATGGCAATGTAATTTGAACCCCACAGTATCTAAGTTTGGTCCCGGTGCTGTTTGGCCTGGTTGTCATCCTGTGGAATTTCCTCTTCCGTTACCTATTCCTGATCCCATTTCAGAGTCACAAGTTCCGTGTAATGGTTCTGAAAGTCCAAGTTCAGCTTCAGTTCTTCTTGAGGACATTGATAATATTGGTGATTCTAATCAATTGGTGAAAACTTTAGTATCAGACACTAGTGAAGATGAAGCAGGGAGAGCTGGTTCAGAAAGCGTAAAAGAAAATGGTGATATGAATTTCCATGGGACTGAAAATTCTGGGAACGAGCAAAATCAAAACATTGGTTCAAATGGAAACTCTAGCAGTAGTGAAACAAACATGGATGGCGAGAAAACCTTCAGCATTTTGATTCGGGGGAGAAGAAATCGAAAGCAGACTCTAAGAATGCCAATAAGTTTGCTTACTCGACCTAATGGCTCACAGTCATTTAAGGTTATTTATAACCGCGTAGTTAGAGGAAGTCATGCTTCCAAGTCTATCAATCTCTCGTCTAGTAAAGATTGTACTGCTACTGCTTGA 5517 0.4296 MAPRNSRGKAKGEKKKKEEKVLPVVIDITVKLLDETHVLKGISTDRIIDVRRLLSVNTDTCYVTNFSLSHEVRGSRLKDTVDVSALKPCLLTLVEEEYNEERAVEHVRRLLDIVACTTSFGPSPPPSPKVAAGTATKSGKSEVPPAKDAAVTVADVDGEISHSCPKLENFYEFFSLSHLTAPIQYVKKGSRRRVEEISEADYLFSLDVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQISRAFDNAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVAAQSPSSFPPLPVEDETWGGNGGSLGKDGTYDLIPWAKEFSLIASMPCKTAEERQVRDRKAFLLHSLFVDVSIFRAIGAIKHVMEEPNVSCSVVENSVVYTERVGDLSIKVLKNGSIASCKIDTKIDGVEATGVNQKDLIERNLLKGITADENTAAHDITTLGVINVRYCGYVVVVKVEGGVRENVDSPSQQIIELFDQPEGGANALNINSLRLLLHNTTPPENNKPMIQIQTFESEETGASHSFVEKLIKESLAKLEEEELGMDYFVRWELGACWMQHLQDQSNNTEKDKKPSLEKAKNEMKVEGLGKPLKSLKNFKKKSDSSNTTSASEYSKFSRESQSPSLPSIESQHETTEAENELVLKRMLSEEAFTRFKESGTGLHCKSMHDLIDLSQKYYTDFALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISSVNKEKMASSIAGALNLLLGIPGNRDSDKSHEVHPLVWKWLEVFLKKRFDWDLHRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPIPFHKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRSKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAATKRRSQITKVRATSYLNLSMSSSDESSKEIPKEASDEEVQIPLAEGSADSEQESNSGPDSEHTILKQISDEKPQIYDEILSEAHAEDGWQPVQRPRSTGSYGRRLKQRRATLGKVYSYQKNVEVGTESPFVRNASPNSRYYFLKKRPISHGGYTGGDHTVNITQGPKFGRKVVKALTYRVKSIPSTSKASANETLETGDKLFGSLSEPDPIDVNPVKNSIVSLGKSPSYKEVALAPPGTISKFQVYNPPSEISVSCEHDGGKPEEEDIEANRNVNPTPAEANDMDKGKNNNSVSSSVDGSQDDTGVTTEGKEETQLIVAVQDKCMSAEGKLGDVEAQGAIDNSRLIQAVDDHVDSSKKELDASNLAGSLEPSDNTNPISQGGKDLRVNVSSLNQSHTGGIPYKKLSASAAPFNPSPAIRTPSIAMNMTLPSGPSVVPGIGPWPVNMNVHPGPTTVLPAVTPMCSSPHHAYPSPPTTPNMMQPLPYMYPPYTQPQSMPPGSFPVTSSAFHANHFTWQCNLNPTVSKFGPGAVWPGCHPVEFPLPLPIPDPISESQVPCNGSESPSSASVLLEDIDNIGDSNQLVKTLVSDTSEDEAGRAGSESVKENGDMNFHGTENSGNEQNQNIGSNGNSSSSETNMDGEKTFSILIRGRRNRKQTLRMPISLLTRPNGSQSFKVIYNRVVRGSHASKSINLSSSKDCTATA 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1419 1439 - -
Phco1g00592 1838 SUPERFAMILY Hypothetical protein c14orf129, hspc210 184 265 IPR023231 -
Phco1g00592 1838 Gene3D Tetratricopeptide repeat domain 869 981 IPR011990 GO:0005515
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1386 1448 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 122 143 - -
Phco1g00592 1838 SMART tpr_5 993 1026 IPR019734 GO:0005515
Phco1g00592 1838 SMART tpr_5 951 984 IPR019734 GO:0005515
Phco1g00592 1838 SMART tpr_5 909 942 IPR019734 GO:0005515
Phco1g00592 1838 ProSiteProfiles Clueless (Clu) domain profile. 297 574 IPR025697 -
Phco1g00592 1838 Gene3D Tetratricopeptide repeat domain 982 1102 IPR011990 GO:0005515
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1153 1174 - -
Phco1g00592 1838 Pfam Tetratricopeptide repeat 992 1067 - -
Phco1g00592 1838 Pfam Tetratricopeptide repeat 908 978 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1492 1518 - -
Phco1g00592 1838 Pfam Translation initiation factor eIF3 subunit 135 697 838 IPR033646 -
Phco1g00592 1838 SUPERFAMILY TPR-like 874 1051 IPR011990 GO:0005515
Phco1g00592 1838 CDD CLU-central 699 839 IPR033646 -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1742 1773 - -
Phco1g00592 1838 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1420 IPR027523 GO:0006996
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1392 1406 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 566 640 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 603 634 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1502 1518 - -
Phco1g00592 1838 Pfam Mitochondrial function, CLU-N-term 44 114 IPR028275 -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 1723 1773 - -
Phco1g00592 1838 MobiDBLite consensus disorder prediction 567 591 - -
Phco1g00592 1838 ProSiteProfiles TPR repeat profile. 909 942 IPR019734 GO:0005515
Phco1g00592 1838 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 864 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00592 Phco-Chr1 5138327 5159324 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00592 1 5138327 5159324 Phco1g00592 1 5138327 5159324 ECH
Phco11g01232 11 9235778 9251159 Phco1g00592 1 5138327 5159324 PCT