Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01232 ATGGCACCAAGATACAGTCGCGCAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAAAAGGTTCTTCCTGTTGTAATGGATATCACTGTCAACCTCCCCGATGAAACACATGTTGTTCTCAAGGGTATATCAACGGACAAAATCATCGATGTTCGTCGGCTTTTATCAGTGAAGACTGAGACTTGTTATATCACCAATTTTTCCCTATCTCATGAGGTGAGAGGACCGCAACTGAAGGACGCGGTGGACGTGTTGGCACTGAAGCCATGCGTCCTCACTTTAATCGAAGAGGATTATGACGAAGATAGAGCAGTGGCCCACGTCAGACGGCTACTGGACATCGTGGCCTGCACGTCGAGCTTCGGCCACTCGTCGGAGGCGAAGAATGTGAACTCTCACGCGCCGCCGCCCTCGGCGGCAGCGGTTGACGGAGATGGCGAGATAAGCCACTCGTGCCCTAGGCTGGGGAGCTTCTACGAGTTTTTCTCTCTTCTGCATCTCACCCCTCCTTTCCAATATATGAAGAAAACAGTGAGACGACGAGTTCCAGAGATATTAGAGGCGGATCATCTCTTCTCCTTTGATGTGAAGCTATGTAACGGGAAAGTAGTGCACGTTGAAGCTTGCAGAAATGGATTTTGCAGTTTTGGAAAGCAGCAGATATTTAGTCATAACCTTGTTGATTTGTTAACACGGCTTAGTAGAGCTTTTGATACTGCTTATGATGATCTAGTAAAAGCATTTTCAGAACGTAACAAGTTTGGGAATCTCCCTTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGCAGTGGCGCAATCACCGTCACTTTTCCCTCCCCTTCCTGTGGAGGATGAAAATTGGGGAGGAAATGGTGGCGGTCTAGGAAGGGATGGAAAATTTGATTTGATTCCTTGGGCAAAGGAGTTTTCATTTATTGCATTTATGCCTTGCAAGACAGCAGAAGAAAGGCAAATCCGTGATAGAAAAACATTCCTTCTCCACACCTTATTTGTTGATGTTGCCATTTTGAGAGCTATTAGGGCTGTTAAACATGTAATGGGAGAGTCAGATTTACACAGTTCTATTACAGAAAATGATATTATTTTCACCGACAGAGTAGGTGACTTGAGTATTAGAGTAATGAAGGATGCTTCTGTCGCTAACCGCAAGGTTGATTCGAAAATCGATGGAGTTGAAACTTCTGGAATAAATCAAAAGGATCTAATACAGAGAAATCTACTGAAAGGAATTACTGCTGATGAGAATACTGCAGCCCATGATATTACCACTTTAGGTGTTGTTGTTGTAAGATATTGTGGTTATGTGGTTGCTGTGAAAGTTGAGGGGGGAGAAAATGAAAATATCAACTCTTCATCTTATCAAAGTATTGAATTGTTTGATCAGCCAGATGGTGGTGCCAATGCACTCAACATTAACAGTTTAAGACTACTTCTCAACTCAGCACATTCGGAGAAGAATAGACCCAATCAGATGCAAATGCCGGAGACTGAAGAGCTTGGAGTTTCTCAAGCTTTTGTGGAGAGGCTTATTAAAGAAAGCCTTTCTAAGCTTGAGGAAGAGGAACCTGGTTTGGACAATTTCATAAGATGGGAACTTGGAGCATGTTGGATACAACATTTGCATGACCAAAATGCTGAAAAAGATAAAAAACCGTTGTTGGATAAGGCTAAGATTGAAATGAAGGTTGAGGGGCTAGGGAAACCCTTTAAAGCCCTCAAGAATAATAAAAATAAATCTGATCTAAGTAGTGCAAAACTGGCTTCTGAAAACTCCAAATCTCATCTGGCATGCGTTAATGGAGAGCCCAAAAGTGCTTTAGTGCCCTCGGTAGAATCCAAACATGAAACAGCAGCAGCAGAAAATGAGCTTGTGCTAAAGGGTTTGCTATCTGAAACAGCTTTTACTCGGTTAATAGAATCAGGAACTGGACTTCACAGCAAGTCAATGCAAGAGCTGATTGATTTGTCTCAGAAATATTACATGGATGTTGCTCTCCCAAAGCTGGTTGCCGATTTTGGCTCGTTGGAACTCTCTCCTGTGGATGGACGCACCTTAACTGATTTTATGCATACTAGGGGTCTACGTATGCGTTCTCTTGGACATGTTGTCAAGCTTTCCGAAAAACTATCACATGTACAATCACTTTGTATTCATGAGATGATAGTTCGCGCTTTCAAGCATATCCTGCAGGCAGTGATTGCAGTTGTTGACAAGGAGAAAATGGCTGCATCCATTGCTGCTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAGTCAGATAAATCGTGCAAAATCCACCCCCTTGTATGGAAATGGCTGGAGGTGTTTCTGAAGAAGCGATTTGATTGGGATCTTAGGAGCTTGAATTACAGTGATGTGAGGAAGTTTGCGATTTTGCGTGGCTTATGTCATAAGGTTGGCATTGAGCTTGTTCCAAGGGATCTTGATATGGATTGTCCAATTCCCTTCCAGAAATCTGATATTGTAAGCTTGGTCCCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGCAGGCAGCTATTAGAGTCATCAAAAACAGCTTTAGACAAGGGAAAGCTAGAAGATGCAGTTACCTATGGAACAAAGGCTCTTGCCAGACTTGTAGCAGTTTGTGGCCCCTATCATCGGATGACAGCGGGAGCATACAGCTTACTTGCTGTAGTCTTATATCACACTGGAGATTTCAATCAGGCTACAATTTATCAACAAAAAGCTCTGGATATTAATGAGAGAGAGCTGGGTCTGGATCATCCAGATACTATGAAGAGTTATGGGGATCTTGCAGTTTTCTACTACAGACTTCAACATACAGAGCTGGCTCTGAAGTATGTAAAGCGTGCTTTATATCTTCTGCATCTAACGTGTGGCCCATCTCATCCAAACACTGCTGCAACATACATTAACGTGGCTATGATGGAGGAAGGTCTTGGAAATGTACATGTTGCTCTTAGATATCTTCACAAAGCTCTAAAATGCAACCAAAGATTACTTGGTCCAGATCATATTCAGACTGCTGCTAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCTTTGAGTGTACAGCATGAGCAAACAACATTGCAAATTCTGCGGGCAAAGCTTGGTCCAGATGACTTGCGGACTCAGGATGCTGCTGCTTGGCTTGAGTATTTTGAGTCCAAGGCTATAGAACAACAAGAAGCTGCACGGAATGGTACTCAAAAGCCAGATACATCTATTGCTAGCAAAGGCCATCTAAGTGTGTCAGACTTGCTTGACTACATTAATCCAAGTCATGATCCCAAAGGGAGAGATATTGCACTAAGGAAAAGAAGCCAGATATCTAAGATGAGGATGGAATCCTGCCAGAACATTGGCTCAGCAAGTTCTGATGAGTCATGGAAAGAAACTCCAAGAGAGACTTCAGATGAAGTAATACTCATACCTGGAGCAGGTGTTGCTGTAGATACTGATCTGGAGACCAACTCAGCACCTGATTCAGAACAGCCCATTTTAGAAAAGACCTCGGATGAAAAACAAGTTTCTGTTGAAATATTGTCTGAAGCACCTGCTGATGGTGAGGATGGATGGCAACCAGTTCAACGGCCAAGATCATCTGGTTCAAATGGCCAGCGGCTGAAGCAAAGACGAGCAACAATTGGTAAAGTTTATTATCAGAAAAAGAAAGTGGAATCTGACATAGACTATACTTATGGGAAGAGTAGTGATCAGAATAGTAGATATTATATTCTGAAGAAGAGAACAATATCCCATGGGGTTTATGCTGATGATCAGAGTGTAAACATATCTCAAGGTACTAAATTTGGAAGGAAAGTGGTCAAAGCTGTTACATACCGGGTGAAGTCCATGTCTGCATCTGATAAGGCTACTGTAAAAGATTCATCAGAAATTGATGACAAACTAATCAGTTCTTATTCACAACTTGGTTCAGTTTCATCACCAAATGATAATAGTACTATCAAGACTTCTATAGTTAGTATTGGGAAATCTCCTTCATACAAAGAAGTGGCAGTGGCTCCTCCTGGGACAATTTCCAAGTTGCAAATCTATAATCCTCAAAGTAACATTCCAGGTTTTGGCGTGGGCAAACATGAAGAGGAAGATTTTAAAATTCATGCAAATTTTAAACCAACCCCGGAAGAGGTAAAAAATACATTAAAACCGAAGGACGAAAATTCTCTCTCAGATTCTTTGGATGATTCAAATCATACTAATGATTCTGAGAGGAAACAAACACAGTTTACTGATTCTGTTCAAGAAAATTTGGAGAGTGCTAAATGGGTTGATTCTGTGGATGTTGAGGTTCATGAAACAGTTGATAACATCATAATGATTGATGCAGTGGAGGATCCTGTGGATTCTCATAAACTTGAGGTTGACACTAGCAACTCTGACTGTTTTGAACTCCCTAATCATACTAGTACTACCATCTCACAAGAAGGGGAAGATTTAAGAGTCAGTGTTTCTCCTTCAAGTCAGGGTGATTCCCAGGGCATCCCATATAAGAAGTTATCTGCATCTGCAGCTCCATTCAATCCTGCACCAGGCATTGCTCGAGCTGCACCAGTTGCCTTGAATGCAACACTTCCTTCTGCTTCTGGTGCTGTTCCATCAATTGGCCCCTGGCCAGTAAATATGAATGTTCGCCATGGACCTGCTACCATGTTACCAGCAGTTACCCAATTGTGTTCCACTCCTCACCATGTTTACCCATCTCCTCCACCTACACCAAACATGATACAACCATTGCCATTTTTGTATCCTCCTTATACTCAGCCTCAATCAATAGCATCCAACAATTTTCCAGTTACTATCAGTGCATTTCATGTCAATCAGTTCACATGGCAATGTAATATGAACCCAACTGCATCTAATTTTGGTCCCAATGCAGTATGGCCTGGTGGTCATCCGGTGGAATTTCCTCTTCTAGCGCGTAGCACCAAACCAATCCCTGATTCCATTTTGGAGCCACAAAAACAGTGTCATGTTTCAAAAAATTCTAGCTCAGCTTTTGTTCTGCCAGAGGGCATTAATAACGTTGGTGGATACAAGAAAGAGGTGCAACCTTTAGAATCAGAGATTAATGAGGATGAAGTGGGTAGAGTTCACACAGAAAGTGTAAAGGAAAATGGAAATCCTAATTTTCATGGGTTAGAAAATGCTGGGGATAAACCCAATAATAACATTGGCTTGAGTAAGATCAGCAGAAATGAAAAGAACATAGATGGTGAGAAAACCTTCAGTATTTTGATTAGGGGAAGAAGAAACCGGAAGCAGACACTAAGAATGCCAATAAGTTTGCTAACTAGACCCAATAGCTCACAGTCATTCAAGGTTATTTATAACCGTGTAGTCAGAGGAAGTGATGTACCCAAGTCCATCAACTTGTCTTCTGGAAGAGATTAG 5478 0.4208 MAPRYSRAKAKGEKKKKEEKVLPVVMDITVNLPDETHVVLKGISTDKIIDVRRLLSVKTETCYITNFSLSHEVRGPQLKDAVDVLALKPCVLTLIEEDYDEDRAVAHVRRLLDIVACTSSFGHSSEAKNVNSHAPPPSAAAVDGDGEISHSCPRLGSFYEFFSLLHLTPPFQYMKKTVRRRVPEILEADHLFSFDVKLCNGKVVHVEACRNGFCSFGKQQIFSHNLVDLLTRLSRAFDTAYDDLVKAFSERNKFGNLPYGFRANTWLVPPAVAQSPSLFPPLPVEDENWGGNGGGLGRDGKFDLIPWAKEFSFIAFMPCKTAEERQIRDRKTFLLHTLFVDVAILRAIRAVKHVMGESDLHSSITENDIIFTDRVGDLSIRVMKDASVANRKVDSKIDGVETSGINQKDLIQRNLLKGITADENTAAHDITTLGVVVVRYCGYVVAVKVEGGENENINSSSYQSIELFDQPDGGANALNINSLRLLLNSAHSEKNRPNQMQMPETEELGVSQAFVERLIKESLSKLEEEEPGLDNFIRWELGACWIQHLHDQNAEKDKKPLLDKAKIEMKVEGLGKPFKALKNNKNKSDLSSAKLASENSKSHLACVNGEPKSALVPSVESKHETAAAENELVLKGLLSETAFTRLIESGTGLHSKSMQELIDLSQKYYMDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILQAVIAVVDKEKMAASIAAALNLLLGVPENRESDKSCKIHPLVWKWLEVFLKKRFDWDLRSLNYSDVRKFAILRGLCHKVGIELVPRDLDMDCPIPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALARLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAIEQQEAARNGTQKPDTSIASKGHLSVSDLLDYINPSHDPKGRDIALRKRSQISKMRMESCQNIGSASSDESWKETPRETSDEVILIPGAGVAVDTDLETNSAPDSEQPILEKTSDEKQVSVEILSEAPADGEDGWQPVQRPRSSGSNGQRLKQRRATIGKVYYQKKKVESDIDYTYGKSSDQNSRYYILKKRTISHGVYADDQSVNISQGTKFGRKVVKAVTYRVKSMSASDKATVKDSSEIDDKLISSYSQLGSVSSPNDNSTIKTSIVSIGKSPSYKEVAVAPPGTISKLQIYNPQSNIPGFGVGKHEEEDFKIHANFKPTPEEVKNTLKPKDENSLSDSLDDSNHTNDSERKQTQFTDSVQENLESAKWVDSVDVEVHETVDNIIMIDAVEDPVDSHKLEVDTSNSDCFELPNHTSTTISQEGEDLRVSVSPSSQGDSQGIPYKKLSASAAPFNPAPGIARAAPVALNATLPSASGAVPSIGPWPVNMNVRHGPATMLPAVTQLCSTPHHVYPSPPPTPNMIQPLPFLYPPYTQPQSIASNNFPVTISAFHVNQFTWQCNMNPTASNFGPNAVWPGGHPVEFPLLARSTKPIPDSILEPQKQCHVSKNSSSAFVLPEGINNVGGYKKEVQPLESEINEDEVGRVHTESVKENGNPNFHGLENAGDKPNNNIGLSKISRNEKNIDGEKTFSILIRGRRNRKQTLRMPISLLTRPNSSQSFKVIYNRVVRGSDVPKSINLSSGRD 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01232 1825 SMART tpr_5 982 1015 IPR019734 GO:0005515
Phco11g01232 1825 SMART tpr_5 940 973 IPR019734 GO:0005515
Phco11g01232 1825 SMART tpr_5 898 931 IPR019734 GO:0005515
Phco11g01232 1825 ProSiteProfiles TPR repeat profile. 898 931 IPR019734 GO:0005515
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1397 1434 - -
Phco11g01232 1825 CDD CLU-central 688 828 IPR033646 -
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1731 1751 - -
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1137 1159 - -
Phco11g01232 1825 Gene3D Tetratricopeptide repeat domain 857 971 IPR011990 GO:0005515
Phco11g01232 1825 Gene3D Tetratricopeptide repeat domain 972 1102 IPR011990 GO:0005515
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1173 1232 - -
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1397 1442 - -
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1218 1232 - -
Phco11g01232 1825 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 853 1103 - -
Phco11g01232 1825 Pfam Translation initiation factor eIF3 subunit 135 686 826 IPR033646 -
Phco11g01232 1825 MobiDBLite consensus disorder prediction 1500 1522 - -
Phco11g01232 1825 Pfam Tetratricopeptide repeat 897 967 - -
Phco11g01232 1825 Pfam Tetratricopeptide repeat 981 1055 - -
Phco11g01232 1825 SUPERFAMILY TPR-like 863 1051 IPR011990 GO:0005515
Phco11g01232 1825 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1447 IPR027523 GO:0006996
Phco11g01232 1825 MobiDBLite consensus disorder prediction 125 145 - -
Phco11g01232 1825 ProSiteProfiles Clueless (Clu) domain profile. 285 560 IPR025697 -
Phco11g01232 1825 Pfam Mitochondrial function, CLU-N-term 45 115 IPR028275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01232 Phco-Chr11 9235778 9251159 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01232 11 9235778 9251159 Phco1g00592 1 5138327 5159324 PCT