Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00583 ATGGACCAACCGCCGCACCACCACAGCAGCAACGCCACCATCTCCGCCGATAAGCCATCCACGCCGCGAGGCGGCACGCGTCACCCACTCTTCCGCGGAGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAATCGCGCATATGGCTTGGCTCCTTTCCGGCGCCGGAGATGGCGGCGAAGGCCTACGATGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCAGCACTCCCCGCGACATCCAGGCTGCCGCCGCCAAGGCCGCGCACATGATGATGGTCCAGGCTGCCGGCGCCACTGACTCTCCGGAGAAGAGCAGCATTACCTCCGGATGCGACCACGCAGCCGATGACTTCTGGCGCGAGATTGAGCTGCCGGAGCTCCTCCACAGAAAGTGGTGGACCTCTTCCGCCGAATCCTCGCCGTGGACGGAGACTGACCTCCCGCCGCAGCAACCCTTCACCATGGCGTGCTTGTAG 552 0.6612 MDQPPHHHSSNATISADKPSTPRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSASTPRDIQAAAAKAAHMMMVQAAGATDSPEKSSITSGCDHAADDFWREIELPELLHRKWWTSSAESSPWTETDLPPQQPFTMACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00583 183 MobiDBLite consensus disorder prediction 164 183 - -
Phco1g00583 183 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Phco1g00583 183 MobiDBLite consensus disorder prediction 1 20 - -
Phco1g00583 183 MobiDBLite consensus disorder prediction 1 33 - -
Phco1g00583 183 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Phco1g00583 183 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Phco1g00583 183 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Phco1g00583 183 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Phco1g00583 183 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Phco1g00583 183 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Phco1g00583 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 152 - -
Phco1g00583 183 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Phco1g00583 183 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00583 Phco-Chr1 5037597 5038148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00583 AP2 7.4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00583 1 5037597 5038148 Phco1g00583 1 5037597 5038148 ECH
Phco11g01220 11 9158884 9159435 Phco1g00583 1 5037597 5038148 PCT