Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01220 ATGGACCATCAACCCCCACCCTGCCCCGAAGACGACCTAACCACCGCCACCCCTAGGTCCGGCACGCGCCACCCAGTCTACCGCGGTGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAGAAGAACCGCATATGGTTGGGGTCTTTTCCGGTGCCAGAGATGGCGGCGCGAGCGTACGACGTCGCCGCGTACTGCCTCAAGGGTCGGAAGGCGCAGCTCAATTTTCCCGACGAGGTGGACTCCCTGCCGCTTCCCCCATCCCGCACGGCCAGGGACATTCAGGCCGCCGCGGCCAAGGCGGCGCGCATGATGAAAGCGGTCGTCAGTGACGAGAAAAACAGCATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTGCTGGAGTTGCCGTGGAGGATCCTCATGGACTACCTCTGGCGACATCGCCGATTGGACGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTCCTGGCCTGTCTATAA 552 0.6322 MDHQPPPCPEDDLTTATPRSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPPSRTARDIQAAAAKAARMMKAVVSDEKNSIADDDGDSGGDDFWGEIELPELMDGECCWSCRGGSSWTTSGDIADWTEEELSPQQPSFLACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01220 183 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 MobiDBLite consensus disorder prediction 1 27 - -
Phco11g01220 183 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Phco11g01220 183 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Phco11g01220 183 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Phco11g01220 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 121 - -
Phco11g01220 183 FunFam Ethylene-responsive transcription factor 2 25 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01220 Phco-Chr11 9158884 9159435 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco11g01220 AP2 1.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01220 11 9158884 9159435 Phco1g00583 1 5037597 5038148 PCT