Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00566 ATGAGTGTTTACAGCACCGTATTGCTCGTAATCCTCAGTTTGGTGGTAGCTTTCGTAATTCGGCGGTTGCTGTTCACAACGGGATTGATACACAGCATAAGGAAAGTCTTGAGAAGGGTTCAGGATTGGTTCCACGTGTACCAGTTCCTCAAAGTCCCTGAATTCAATGAAGCCATGCAGCGGAATCACCTTCACCGCAAAGTGTCTCTCTATTTGCATTCTCTTCCTTCAATAGAAGATGCTGACTTCACCAATCTCGTTTCAGGTTACGACCAAAACGACATCGTTTTGCGCCTCGACCCTAACCAAACCATCCAGGATCATTTCCTCGGGGCCACACTCTTCTGGTTCGAACAAAAAACCGAACCCGACCGGATTTCCTCCTTCGTTCTCAAAATCAGAAAAACAGATAAACGCCGAATCCTACGCCAGTACCTCCGCCATATCAATACCGTTGCCGACGAGATGGAGAACCAAAGGAAGCGCCATTTGCGGTTGTTCATGAACGCCGCGGCAACCGAAGGCGGTACTGGAGAAACACGGTGGAGATCAGTTCCGTTCACTCATCCAGCGACTTTTGAAACGATAGTGATGGAAAAGGATCTTAAGAACAAAATCAAATCCGATATCGAATCGTTTCTCAAAGCGAAGCAATACTACCGTAAACTCGGCCGCGCGTGGAAGCGGAGCTTCCTATTGTATGGTGCCTCCGGCACCGGAAAGTCGAGCTTCGTCGCTGCGATGGCGAACTTCCTCCGCTACGACGTGTACGACGTGGACCTCTCGAAGATTCGCGGCGATTCGGATCTTAAGTTTCTCCTAATGGAAACGACGGCGAAGTCGATCGTCGTAGTAGAGGATCTCGACAGATTTCTCGTACCGGAAACGGAATCTGCGGTTACGGTGAGGGGGATCCAGAGCTTCATGGACGGGATTCTGAGCGCGTGTTGTGGTGAGGAGAGGGTAATGGTGTTCACGATGAACAGCAAGGAGTGCGTGGACCCCAACTTGATGCGGCCGGGTCGGGTCGACGTGCACATCCACTTTCCGGTGTGCGATTTCTCGGCATTCAAGACGCTTGCAAGCAGTTACCTCGGCGTTAGGGAGCACAAGCTATTCGCGCAGGTGGAGAATATTTTCCGGCACGGTGGGAGTCTCAGCCCCGCCGAGATCAGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATAAAGTCAGTAATCGGGGCGCTCCAATCGGACGGTGATGGGAGAAAGTACGCGGAGATGATCGGACGGAAGACAGGGGTTGATGACGTGGACGAACCGTCCTTTGGTGGGGACGAGTTATCTACGGTTAAGGATTTGCGGAAATTTTACAGTTTCTTCAAAAAACGGAACGCCAGAAGAGCCAGCTACCCCAAAGTCCAACACCTTGGCCCATGA 1431 0.5171 MSVYSTVLLVILSLVVAFVIRRLLFTTGLIHSIRKVLRRVQDWFHVYQFLKVPEFNEAMQRNHLHRKVSLYLHSLPSIEDADFTNLVSGYDQNDIVLRLDPNQTIQDHFLGATLFWFEQKTEPDRISSFVLKIRKTDKRRILRQYLRHINTVADEMENQRKRHLRLFMNAAATEGGTGETRWRSVPFTHPATFETIVMEKDLKNKIKSDIESFLKAKQYYRKLGRAWKRSFLLYGASGTGKSSFVAAMANFLRYDVYDVDLSKIRGDSDLKFLLMETTAKSIVVVEDLDRFLVPETESAVTVRGIQSFMDGILSACCGEERVMVFTMNSKECVDPNLMRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVENIFRHGGSLSPAEISELMIANRNSPSRAIKSVIGALQSDGDGRKYAEMIGRKTGVDDVDEPSFGGDELSTVKDLRKFYSFFKKRNARRASYPKVQHLGP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00566 476 PANTHER BCS1 AAA-TYPE ATPASE 18 414 - -
Phco1g00566 476 Coils Coil 142 162 - -
Phco1g00566 476 Pfam Domain associated at C-terminal with AAA 32 116 IPR025753 -
Phco1g00566 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 408 IPR027417 -
Phco1g00566 476 Pfam ATPase family associated with various cellular activities (AAA) 232 350 IPR003959 GO:0005524|GO:0016887
Phco1g00566 476 Gene3D - 183 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00566 Phco-Chr1 4822662 4824092 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00566 1 4822662 4824092 Phco1g00566 1 4822662 4824092 ECH
Phco11g01204 11 9015296 9016750 Phco1g00566 1 4822662 4824092 PCT