Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00528 ATGTCACCAACTGTGTATAATAAAACTTTTTTTTCATTCTGTATATTTTATATAACTTTAATTTGTTATCCTCTGTTCTTCTATCTACTCAACTTCTCACTCTTTCCTTTTGCGGTGGATAAAAGCAAAACCAAAAAAATGCCACACACCATTCACGCCTTTGTTACACCCTCTTCTTCTTCTTCTTTGCTACCCTTCAAACTGTACAAACCGCAAGTAAAACGATTCGTTGTACATTTCGGGCTTCCAAGGCGTTCCCGTACATCTCTAGAACCGTCTTCATCGTCTTCTTCTTTCTCTCCGCTGAGGAAAACTAGGGGGGTGGTTGAAGAAAGGATTTATGGAGAAGAATCTGTTTACCCTAAAAAAGGTGATGTTTTTCTGGGCGTAGAAGATAACGAAAAGATTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCTTACTTGCTTGACATGTTCAGGCCATATGGGACCATTCTAGCTGTGGAGGTTTGTCGGGATGATGAGACTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTGCTACGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGAAGGGGTTTTAATAAAGTGAACTCTTCCATCAAGAGAATCTTATACTATGAATCTTCTCATAAGTTGTATGTTGGCAATCTTCCTAAGACTATTAGACCTGAACAGTTGAGAGATCTGTTTAGCAGATTTGGAAATATAGTTAGTCTTAGAGTATTGTTTGATTTTAAACAAGGGAAAAACCGAGCCTATGCCTTTCTCTCCTTTCAATCAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTCTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAACCTTTAACTGAAGCTTCATTGTCTGCATAA 999 0.3984 MSPTVYNKTFFSFCIFYITLICYPLFFYLLNFSLFPFAVDKSKTKKMPHTIHAFVTPSSSSSLLPFKLYKPQVKRFVVHFGLPRRSRTSLEPSSSSSSFSPLRKTRGVVEERIYGEESVYPKKGDVFLGVEDNEKIGKSCEVYVCNLPRSCDAAYLLDMFRPYGTILAVEVCRDDETNESKGCGYVTLGSIYSARNAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSIKRILYYESSHKLYVGNLPKTIRPEQLRDLFSRFGNIVSLRVLFDFKQGKNRAYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASLSA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00528 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Phco1g00528 332 PANTHER OS02G0815200 PROTEIN 85 316 - -
Phco1g00528 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 320 IPR000504 GO:0003723
Phco1g00528 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Phco1g00528 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 313 IPR000504 GO:0003723
Phco1g00528 332 SUPERFAMILY RNA-binding domain, RBD 240 322 IPR035979 GO:0003676
Phco1g00528 332 Gene3D - 224 316 IPR012677 -
Phco1g00528 332 Gene3D - 84 223 IPR012677 -
Phco1g00528 332 SUPERFAMILY RNA-binding domain, RBD 135 227 IPR035979 GO:0003676
Phco1g00528 332 SMART rrm1_1 141 214 IPR000504 GO:0003723
Phco1g00528 332 SMART rrm1_1 244 316 IPR000504 GO:0003723
Phco1g00528 332 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 91 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00528 Phco-Chr1 4266027 4269870 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00528 1 4266027 4269870 Phco7g03037 7 48969672 48970920 PCT