Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00330 ATGTTACTATTTCATTATCTATACCAATATCAAATCAAAATAAAAACAAAAATCAAAATAAAAACCGAAAATAGGAATAAAAAAGGATATCCGAGGAGTTACTCCTTTGCTCTTTTTTCTCTTTCCCTATTCCAATACCAACCCTTCAAGTTTCCACCAGTTATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGATGGTCGCCAGTATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCATATGATGAAGTCTACGAAAGCTTTGATGCAATGGGATTACAAGAAAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGACCTTCTGCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAACAGGCTCAATCTGGGACAGGAAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTGGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGCGTACGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCACACTGTTGTTGGCACTCCTGGCCGTGTCTTTGACATGCTGCGGAGGCAGTCTCTACGCCCAGATTGCATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCTTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATCAAACAGTTTTATGTGAATGTTGATAAGGAAGAGTGGAAGCTAGAGACATTATGCGACCTTTATGAGACTCTGGCCATCACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACAGTCTCTGCCACCCATGGTGACATGGACCAAAACACGCGTGACATCATCATGCGCGAGTTCCGGTCCGGCTCGTCTCGAGTTCTCATTACCACGGACCTTTTGGCCCGTGGCATAGATGTGCAACAAGTGTCTCTGGTGATAAACTATGATCTGCCAACCCAGCCTGAAAACTATCTCCACCGCATAGGGCGTAGTGGCCGGTTTGGAAGAAAAGGAGTTGCTATAAACTTTGTGACAACAGATGATTCCAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTGCTCTGA 1404 0.448 MLLFHYLYQYQIKIKTKIKIKTENRNKKGYPRSYSFALFSLSLFQYQPFKFPPVMAGLAPEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVYESFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDSRMLSDIQKFYNVTVEELPSNVADLL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00330 467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 295 IPR014001 -
Phco1g00330 467 CDD DEADc_EIF4A 98 296 - -
Phco1g00330 467 Gene3D - 303 467 IPR027417 -
Phco1g00330 467 CDD SF2_C_DEAD 307 437 - -
Phco1g00330 467 SMART ultradead3 113 310 IPR014001 -
Phco1g00330 467 Pfam DEAD/DEAH box helicase 119 280 IPR011545 GO:0003676|GO:0005524
Phco1g00330 467 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 451 - -
Phco1g00330 467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 467 IPR001650 -
Phco1g00330 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 448 IPR027417 -
Phco1g00330 467 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Phco1g00330 467 FunFam Eukaryotic initiation factor 4A-II 82 301 - -
Phco1g00330 467 Pfam Helicase conserved C-terminal domain 320 428 IPR001650 -
Phco1g00330 467 Gene3D - 84 302 IPR027417 -
Phco1g00330 467 SMART helicmild6 347 428 IPR001650 -
Phco1g00330 467 FunFam Eukaryotic initiation factor 4A-III 302 467 - -
Phco1g00330 467 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 122 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00330 Phco-Chr1 2452643 2455900 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00330 1 2452643 2455900 Phco1g00330 1 2452643 2455900 ECH
Phco10g01785 10 40273468 40279977 Phco1g00330 1 2452643 2455900 PCT