Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01785 ATGCAAGACAGCAAGGTAGAATTGCATAGTAGAAGAAAAAGCAGAAGTAATGACATAAAAAAACCTAAACTAAACACATTCCTTCTATTCTATTCTCCTTTCTCTTCCCTACAACTCCACGGCGCAGATCCGAGGAGTTTGGGAAACCCTAATTCCTCTTTCGCTTCCCATTCTTTGCTTCTCTCTTTCTCTCTATTCCACCAACTTCAGGTGGTTTTCAATTTGATGGCAGGATTGGCTCCTGAGGGTTCTCAATTTGACGGTCGGCATTATGATTCTAAGATGAATGAATTGCTTTCTGCCGATGGACAAGAGTTTTTCACCTCATATGATGAAGTCTATGATAGTTTTGATGCAATGGGTTTACAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATACAGCAAAGGGGGATTGTTCCTTTCTGCAAAGGTCTGGACGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCTACATTCTGTTCAGGAATTTTGCAGCAACTAGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTTGCTCAGCAGATTGAAAAGGTTATGCGAGCTCTCGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTCCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTACACACTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTGCGCAGACAGTCTCTTCGCCCTGATCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGTGTATTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACCAGAAAGTTCATGAATAGGCCAGTGAGAATCCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTGGAGACATTATGCGACCTTTATGAGACTTTGGCTATCACCCAGAGTGTCATCTTTGTGAACACAAGGCGCAAGGTGGACTGGCTCACAGACAAGATGCGAAGCAATGATCACACAGTCTCAGCCACTCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTTCGCTCGGGCTCTTCTCGAGTTCTAATCACCACTGACCTCTTGGCTCGTGGTATAGATGTACAGCAAGTGTCTTTGGTTATAAACTATGATCTGCCAACCCAACCTGAAAATTATCTTCACCGCATAGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCCATAAACTTTGTGACACTCGATGATTCCAGAATGCTATCTGATATTCAGAAGTTCTACAACGTGACTGTAGAGGAGTTGCCCTCAAATGTTGCTGATCTGCTCTGA 1467 0.4458 MQDSKVELHSRRKSRSNDIKKPKLNTFLLFYSPFSSLQLHGADPRSLGNPNSSFASHSLLLSFSLFHQLQVVFNLMAGLAPEGSQFDGRHYDSKMNELLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGQIQVGVFSATMPPEALEITRKFMNRPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01785 488 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Phco10g01785 488 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Phco10g01785 488 Pfam DEAD/DEAH box helicase 140 301 IPR011545 GO:0003676|GO:0005524
Phco10g01785 488 Gene3D - 105 323 IPR027417 -
Phco10g01785 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 316 IPR014001 -
Phco10g01785 488 Gene3D - 324 488 IPR027417 -
Phco10g01785 488 CDD DEADc_EIF4A 119 317 - -
Phco10g01785 488 SMART ultradead3 134 331 IPR014001 -
Phco10g01785 488 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Phco10g01785 488 FunFam Eukaryotic initiation factor 4A-III 323 488 - -
Phco10g01785 488 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 472 - -
Phco10g01785 488 SMART helicmild6 368 449 IPR001650 -
Phco10g01785 488 FunFam Eukaryotic initiation factor 4A-II 103 322 - -
Phco10g01785 488 CDD SF2_C_DEAD 328 458 - -
Phco10g01785 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 488 IPR001650 -
Phco10g01785 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 469 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01785 Phco-Chr10 40273468 40279977 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01785 10 40273468 40279977 Phco1g00330 1 2452643 2455900 PCT