Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00319 ATGGGTGGTTCGGGAAGATGGCTTAAGTCGCTCATTTCTCTCAGAAAGCCCTCCACAACTGATCAAGATAAGGGTGGTGATAAGAGTAAGAGAAAGTGGAAGTTATGGAGGGGCACTTCAGAAGGGTTTGGGATTGGATCATCCATGCAGAAGGGGCAGGGTGGTGGTGGGTCCTTTGTGGTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTTGTAAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATCCAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGAAAAAATGTCAGTGAGCCCTGCAATGAAGCTGATCCTGTTAAGCAAGCTGAGCAAGGATGGTGTGACATTCCAGGAACTGCGGAAGCAGTTAAGGCAAAATTACAGATGAGGCACGAAGGAGCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAGCAGAAATCAATAGTGAGTGCTAGTCCAAACTCAAAAGCTGCTAAGCCAGTGATTCCTCTCACGCACCGCAGTCTAGACGGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGTCTGCAAAACCATGGGAGAGCAGGTCGATGGTAGACACGTATTTGGACTCATCTGACATGACTCCAGTTACTAGTAAAAGTGATCATTTTGTTCTTCCCTTTAATTCTGATCAACAAAATGGCTCAGTCAAAACAAGAAAGAACGGTGTGACAACCAGGATTTCATCTAAATCACTTAAAGCTAGTCAGTCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATTCACATCTGAATCTCCACCTGTACCATCTACCAACAATGTTATGATGGAAGCAACAGAGGAAGTAAATGTTTGTAAACCAAGCTACATGAACCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATCTTTATGGATGATTGTGTGTCACTTAATGGAGTTACTAGAAGCAGTTCTGGTTCATATCCTTCTGCTAATATGTGGAAGAATATCTATGCAACACCTTTAAGAACACGTTATCAAAAGCGATATACATTGGAAGATAAGTAG 1287 0.4452 MGGSGRWLKSLISLRKPSTTDQDKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQGGGGSFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKNVSEPCNEADPVKQAEQGWCDIPGTAEAVKAKLQMRHEGAIKRDRTKAYSQSKQKSIVSASPNSKAAKPVIPLTHRSLDGKSSGWGMLDRWMSAKPWESRSMVDTYLDSSDMTPVTSKSDHFVLPFNSDQQNGSVKTRKNGVTTRISSKSLKASQSTPSSSSISSECMYDDSPLSTSFTSESPPVPSTNNVMMEATEEVNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLNGVTRSSSGSYPSANMWKNIYATPLRTRYQKRYTLEDK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00319 428 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Phco1g00319 428 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Phco1g00319 428 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Phco1g00319 428 SMART iq_5 85 107 IPR000048 GO:0005515
Phco1g00319 428 SMART iq_5 108 129 IPR000048 GO:0005515
Phco1g00319 428 MobiDBLite consensus disorder prediction 276 339 - -
Phco1g00319 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 128 IPR027417 -
Phco1g00319 428 PANTHER IQ-DOMAIN 5-RELATED 1 403 - -
Phco1g00319 428 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Phco1g00319 428 MobiDBLite consensus disorder prediction 194 216 - -
Phco1g00319 428 Gene3D - 84 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00319 Phco-Chr1 2361139 2367822 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01794 10 40336282 40339100 Phco1g00319 1 2361139 2367822 PCT