Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00300 ATGGCAAATAGTGAGTCTTGTTGTTCAACTCAGCTTATTGATGGAGATGGTACATTCAATACTTCTGGGGTTGAAAACTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGCAGTGGCAAGAGCACACTCTTAAATAATTTGTTCAGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGCACTGGCATAGAGCCTTGTACACTTGTTATGGATTTGGAGGGTACTGATGGAAGAGAACGCGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTATCAGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACCGTCTTTCAAGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGGGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCACTTTCCAGTTATGAAGAAAAGGAAGAGCAATTTAAAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCAGCATTCCATTGCTCCTGGCGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGTTTTTCATTTAGTTCTGAGCATATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTACCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACACATGAGAAATATGCCTCTTTTGCTGCACATGAGGATTGGTGTCAACTGGAAGAGGCTGTCCAATCTGGCCCTGTTCCTGGATTTGGGAGAAAGCTCAGTTCGCTGCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCCACCTATTTTGATGAAGGTGTGAGATCTTCCAAACAAAAGCAACTCCAAGAAAAATTGTTCCAACTTGTCCACCCAGCATTCCAATCTTCGTTGGGACATATAAGATCTGGCACTTTGGATAAATTCAAGGTGGCATTTGACAAGGCTCTGAATGGAGGGGAAGGGTTTTCTGTGGCTGCTAACAATTGCAGTGCGTCTTGTATGGTTCAATTTGATGAAGCATGTGCAGATATTGTTATTGAACAAACAAACTGGGATACATCTAAAGTGCGAGATAAATTGCTGCGGGATATTGAAGCACATGTTGCAACTGTGCGTGCAGCCAAGATTTCTGAACTTACTTCATCATATGAGGAAAAACTTAAACAAGCTTTGTCTGGACCTGTTGAAGCTCTTTTGGACGGAGCTAGTAGTGATACTTGGTCATCAATAAGGAACCTTCTTACGCGTGAGACTTTATCAGCTGTTTCAGGGTTCTCTACTGCACTTACTGGGTTTGATATGGATGAAGAAACAAGACAGAAAATGCTTAAAAGTTTAGAAGATTATGCAAGAGGTCTGGTAGAAGGAAAGGCCAGGGAAGAAGTAGGAAGAGTTCTAATCCGCATGAAGGACAGATTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGAGCCATCACCAAGACTGCTCGATCTGCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATTCGTTTGGATGATGATGACACTGACAATATTGAGAAAGTGTTAGCAGTTGCTTTGGTGGAACCATCACCAAGTAGTAATGGTACTAGGAGCATGACAATGGTTGATCCACTAGCTTCTAGCAGCTGGGAAGAGGTTTCATCCTCTAAAACATTGATTACGCCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTTTCTCAAGCCATTTCTGCACAGGAAGCAAACAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCGATAGCTGCTTTGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTGCTAAAGCCCTGTGGGTGCAGCTTGACATTTCGGGTGAATTTCGCAATGGAGCTCTTCCGGCTATCTTATCCTTGTCTACCAAGTTTGTTCCAACTATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAGAACCATGCAACTAACAATCCTCAGAGAACCCCAACAAAAAACAGTTACAATGAGACTCACGGCGTCTCGTCGAGCACGTCATCTAACCTGACTGCATTGGACAACGGAACCGAGTATGCCAGTCCAGTTAAAGATGAGTAG 2427 0.4277 MANSESCCSTQLIDGDGTFNTSGVENFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFSTNFREMDAFKGRSQTTKGIWMARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFQHSIAPGGLAGDRRGVVPASGFSFSSEHIWKVIKENKDLDLPAHKVMVATVRCEEITHEKYASFAAHEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEATYFDEGVRSSKQKQLQEKLFQLVHPAFQSSLGHIRSGTLDKFKVAFDKALNGGEGFSVAANNCSASCMVQFDEACADIVIEQTNWDTSKVRDKLLRDIEAHVATVRAAKISELTSSYEEKLKQALSGPVEALLDGASSDTWSSIRNLLTRETLSAVSGFSTALTGFDMDEETRQKMLKSLEDYARGLVEGKAREEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDDTDNIEKVLAVALVEPSPSSNGTRSMTMVDPLASSSWEEVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLAKALWVQLDISGEFRNGALPAILSLSTKFVPTIMNLMKKLAEEGQNHATNNPQRTPTKNSYNETHGVSSSTSSNLTALDNGTEYASPVKDE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00300 808 PANTHER PROTEIN SEY1 5 776 IPR008803 -
Phco1g00300 808 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Phco1g00300 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Phco1g00300 808 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Phco1g00300 808 MobiDBLite consensus disorder prediction 763 798 - -
Phco1g00300 808 Coils Coil 218 238 - -
Phco1g00300 808 CDD GBP 36 242 - -
Phco1g00300 808 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
Phco1g00300 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Phco1g00300 808 Gene3D - 14 245 IPR027417 -
Phco1g00300 808 MobiDBLite consensus disorder prediction 763 808 - -
Phco1g00300 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 276 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00300 Phco-Chr1 2210752 2220502 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01817 10 40478684 40487823 Phco1g00300 1 2210752 2220502 PCT