Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01817 ATGTGTGTTTATTATCCAGCATACCATGACAAATGTTGTTCCACTCAGCTTATTGATGGAGATGGTACAATCAATGTTTCCGGAATCGAAAACTTCATGAAAGAGGTTAAATTAGGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGCACACTCTTAAACAGTTTGTTTAGTACCAACTTCAGAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAAATGTGTTGGCATAGAGCCCTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGACACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGCGAACAAGCTGCAAATAAGCCTCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGCCCACGCAAAACAACATTGCTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACTATTCAAGGAGCAGGTTGCCAATTTGAGGAACCGATTCCAGCATTCTATTGCTCCAGGTGGCCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGTGCTCAGGAAATCTGGAAAATCATTAAGGAGAATAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCTAATGAGAAACATGACCTTTTTACTTCAAATAAGGACTGGTGTGAGTTGAAAGAGGCTGTGCAATCTGGCCCTATTTCTGGTTTTGGGAAAAATCTCAATTCACTCCTTACCACTTGTCTTTCAGAATATGATGCTGAAGCCAATTATTTTGACGAAGGTGTCAGATCGGCAAAACAAAAGCAACTTCAAGAAAAGCTATTGCAACTTGTCCAACCAGCATTCCAAACAGCGCTGGGACATGTAAGGTCTAGAGTTTTTGATAAGTTCAAGGAAGCGTTTGACAAGGCTTTGAATGGAGGGGAAGGGTTTTCTTCTGCTGCTAATACGTGTGTAGAGTCTTGTATGACTAGGTTTGATGAAGGATTTGCAGATGTTGTCATTGAAATAGCAAACTGGGATGCATCTAAAGTGAGGGAGAAGCTACGGCGTGATGTTGATACACATGTCTCATCTGTCCGAGCAACTAAGATGTCAGAACTAGTTTCATCATATGAGGAAAAACTGAAGGAGGCATTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAGTAAAGATACTTGGCCATCGATAAGGAAACTTCTTAATATTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGCTGAACTTGTCAGATATGATACGGATGAAGAAACGAAAAAGAGCATGATTGTGGCTTTAGAGGATTATGCAAAGGGTATGATAGAAGCCAAGGCCAGGGAGGAGGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGTAAAGAAGATATTCGAGCCATCACAAAGTCTTCCCGCTCTGAATGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGTTTGGCTGATGCTGATGACATCTATGATATAGAGAAAACATTAACAGTCGCATTGGCAGATTCGTCAAGCGATTCTGGTAAAGATAATAGCATCACGACACTCGATCCACTGGCGTCAAGCACTTGGGACCAGGTACCAACCTCTAAAACATTGATCACACCTGTCCAGTGCAAATCGTTATGGAGGAAATTCAAGATGGAGACAGAATATACTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGCTTATTCTTGGATTTAATGAATTTATGACAGTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTTGTTGGCTATCTTCTCATGAAATCCCTATGGGTGCAGCTAGACGTTGCAGGAGAATTTCAAAATGGAGCTCTTCCAGGAATCATCTCCTTGTCTAGCAAATTTGTTCCAACTATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAGGGCACTGCAGCCAATGATCATAGTAGAAATTCATCAAAAAGCTATGAAAGGCCTGTTCCTTCTGGTAGAGTTACATCATCTATAGCTTCTTCTGGTGTGACTTCTTTGGGCAATAGAACGGACTCAACCGAGTATACCAGTCCATTAAAAGACGAGTAG 2463 0.4174 MCVYYPAYHDKCCSTQLIDGDGTINVSGIENFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNSLFSTNFREMDAFKGRSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSDFFIVEVVALSSFEEKEELFKEQVANLRNRFQHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKHDLFTSNKDWCELKEAVQSGPISGFGKNLNSLLTTCLSEYDAEANYFDEGVRSAKQKQLQEKLLQLVQPAFQTALGHVRSRVFDKFKEAFDKALNGGEGFSSAANTCVESCMTRFDEGFADVVIEIANWDASKVREKLRRDVDTHVSSVRATKMSELVSSYEEKLKEALSAPVETLLDGASKDTWPSIRKLLNIETQSAVSGFSAELVRYDTDEETKKSMIVALEDYAKGMIEAKAREEAGRVLIRMKDRFMTLFSHDSDSMPRIWTGKEDIRAITKSSRSECLKLLSVMAVIRLADADDIYDIEKTLTVALADSSSDSGKDNSITTLDPLASSTWDQVPTSKTLITPVQCKSLWRKFKMETEYTVSQAISAQEANNRSSNWLPPPWAIVALLILGFNEFMTVLRNPLYLGVIFVGYLLMKSLWVQLDVAGEFQNGALPGIISLSSKFVPTIMNLMKKLAEEGQGTAANDHSRNSSKSYERPVPSGRVTSSIASSGVTSLGNRTDSTEYTSPLKDE 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01817 820 Gene3D - 20 250 IPR027417 -
Phco10g01817 820 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 23 278 - -
Phco10g01817 820 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 51 286 - -
Phco10g01817 820 MobiDBLite consensus disorder prediction 767 820 - -
Phco10g01817 820 MobiDBLite consensus disorder prediction 771 812 - -
Phco10g01817 820 Pfam Sey1 three-helix bundle domain 328 766 IPR046758 -
Phco10g01817 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 253 IPR027417 -
Phco10g01817 820 PANTHER PROTEIN SEY1 10 779 IPR008803 -
Phco10g01817 820 Coils Coil 223 243 - -
Phco10g01817 820 CDD GBP 41 247 - -
Phco10g01817 820 Hamap Protein SEY1 [SEY1]. 14 768 IPR008803 -
Phco10g01817 820 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 42 257 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01817 Phco-Chr10 40478684 40487823 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01817 10 40478684 40487823 Phco1g00300 1 2210752 2220502 PCT