Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00298 ATGAGCTTCAACAAGCTCATAGTGTGGAATGTGCCACTACTCTTGGTGGTGGTGTTTGCATGGTCACTGATCGGTCATGCTTCAGCTTCTGTGTCCTATGACCATAAAGCTATCACCCTCAATGGACAAAGAAGGATACTGCTTTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGGCATGAGCCTTCACGCGGCAAATATTACTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAACTTCAGGACAGACAATGGACCGTTTAAGTTTGAAATGGAAAAATTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATAATTATATCTCAGATCGAAAATGAATATGGACCTCTGGAGTATGAAGTTGGTGCTCCAGGTAGAGCCTACACTCAATGGGCGGCTCATATGGCTGTAGGACTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAATACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTCATAGACCTGCTGAGGATTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATATGTCAACTACTATATGTATCACGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACAAGCTATGATTATGATGCACCTCTTGATGAATATGGACTGGCTAGACAGCCAAAGTGGGGTCATCTGAAAGATTTACATAGAGCGATAAAACTCTGTGAACCTGCTTTAATATCAGGAGATCCTACTGTACAGCGGCTTGGAAACTATGAAGAGGCTCATGTCTTTAGATCAAAGTCTGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCGCAATCTTATGCAACAGTGGCATTTGGAAATCAGCATTACAATTTACCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGAGTCGTGTTCCTATTCATGGAGGACTATCTTGGAAAGCGTTTAATGAAGAGACAACCACTACTGATGATAGTTCCTTCACTGTGACTGGCCTGTTGGAGCAGATAAATGCAACCAGAGATTTGTCTGACTACTTGTGGTACTCCACGGATGTTGTGATCAATCCCAATGAAGAATTTTTAAGGAATGGAAAGAATCCTTTTCTTACAGTTTTATCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGCTCTCAGGAACTGCATATGGAAGCTTAGAGTCCCCCAAACTAACCTTTAGCGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTTTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATAACATTAAGTGGTCTCAATGAGGGGAGAAGAGACTTAACTTGGCAAAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTACATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCTAAAAGACAGCCATTGACATGGTACAAAACTACCTTTGATGCCCCAGCTGGAGTTGCACCATTGGCTTTAGACATGGTCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAAAGTCTGGGCCGCTACTGGCCTGCTTACAAAGCATCTGGTTCCTGTGGTTATTGTAACTATGCAGGGACTTACAATGAGAAAAAATGTGCAAGTAACTGTGGCGAGGCTTCTCAACGATGGTACCATGTTCCTCATTCTTGGCTGAAGCCAACCGGAAATTTATTGGTTGTGTTCGAGGAACTGGGTGGGGATCCGAACGGGATCTTTTTGGTTAGAAGGGATATTGACAGCGTATGTGCTGATATCTATGAGTGGCAGCCAAATCTTGTTAGTTATGAGATGCAAGCTTCTGGCAAAGTCAGAAGTCCTGTGAGACCAAAGGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGATCTTGTGGAAGCTACCGGGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCATTCCAGAAGAATTGTGTTGGGCAAAGCTGGTGCACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTCATGAAGAAGCTCTCAGTGGAGGCCATTTGCACCTGA 2535 0.4375 MSFNKLIVWNVPLLLVVVFAWSLIGHASASVSYDHKAITLNGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSRGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTDNGPFKFEMEKFTKKIVDMMKAERLFESQGGPIIISQIENEYGPLEYEVGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSYVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLARQPKWGHLKDLHRAIKLCEPALISGDPTVQRLGNYEEAHVFRSKSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMSRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEEFLRNGKNPFLTVLSAGHALHVFINNQLSGTAYGSLESPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSKRQPLTWYKTTFDAPAGVAPLALDMVSMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCASNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVRSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGSYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00298 844 Gene3D - 597 735 - -
Phco1g00298 844 FunFam Beta-galactosidase 754 844 - -
Phco1g00298 844 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Phco1g00298 844 FunFam Beta-galactosidase 449 586 - -
Phco1g00298 844 Pfam Galactose binding lectin domain 766 843 IPR000922 GO:0030246
Phco1g00298 844 ProSiteProfiles SUEL-type lectin domain profile. 758 844 IPR000922 GO:0030246
Phco1g00298 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Phco1g00298 844 FunFam Beta-galactosidase 295 423 - -
Phco1g00298 844 PANTHER BETA-GALACTOSIDASE RELATED 21 745 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Phco1g00298 844 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Phco1g00298 844 SUPERFAMILY Galactose-binding domain-like 585 748 IPR008979 -
Phco1g00298 844 Gene3D - 755 844 IPR043159 -
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Phco1g00298 844 FunFam Beta-galactosidase 594 735 - -
Phco1g00298 844 Gene3D Glycosidases 27 347 - -
Phco1g00298 844 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
Phco1g00298 844 CDD Gal_Rha_Lectin_BGal 758 843 - -
Phco1g00298 844 FunFam Beta-galactosidase 26 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00298 Phco-Chr1 2190708 2195909 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00298 1 2190708 2195909 Phco1g00298 1 2190708 2195909 ECH
Phco10g01820 10 40502865 40508394 Phco1g00298 1 2190708 2195909 PCT