Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01820 ATGTGCTTCAAGCTCAAAATGTGGAACGTGGTGCTGCTTCTTGTTTGTTCTCTCATTGCTTCTGCTGAGGCCTCAGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGGTTGGATGTAATTCAGACTTATGTTTTCTGGAATGGGCACGAGCCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCGGGCCTTTTTGTTAATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCTGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGTATCAAATGCAAAAATTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAGACTCAGGGAGGTCCAATAATTATGTCCCAGATTGAAAATGAATATGGACCTATAGAGTATGAAATTGGTGCTGCGGGTAAAGCTTATACTAATTGGGCAGCAGATATGGCTATGGCACTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACGGAGTTTGGAGGTCCAGTTCCTCATCGACCAGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTCTACAGAAAGGAGGATCATTTATAAACTATTACATGTATCATGGGGGAACAAACTTCGGTCGAACTGCTGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCTCTTGATGAATATGGTTTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTGTGTGAACCAGCCTTAGTATCGGGAGATCCTACCGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTGTTTAAATCAAAGTTGGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGAAGTATGCATTACAATTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTATTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTGGTGTTCCTATTCATGGCGGACTCTCTTGGCTATCATTCAATGAAGAAACGACTACTACTGATGATAGTTCCTTCACCATGACTGGACTGTTAGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCTACAGATGTTGTGCTTGATCCCAATGAAGGATTTCTGATAAACGGAAAGGAACCTGTTTTTACTGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAACTTTCAGGAACTTCATATGGAAGCTTAAATTTCCCAAAACTGACATTTAGTGAAGGAGTGAAGCTCAGAGCCGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCTCATTTTGAAACATGGAATGCCGGTGTTCTTGGCCCAATTTCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTTAGTGGAAGTTCCTCAGTGGAGTGGATTCAGGGATCTTTAGTTTCTAGAAGACAGCCTTTGACTTGGTACAAAACAACTTTCGATGCGCCAGCTGGCACTGCACCATTGGCTTTAGACATGGACAGCATGGGTAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTTCTGGCCTGCTTATAAAGCTTCCGGTGCCTGTGATCATTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAATTGTGGCGAGGCCTCTCAAAGATGGTATCATGTTCCTCAGTCATGGCTAAAGCCTACAGGAAATTTATTGGTTGTGTTTGAAGAACTAGGTGGAGATCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTGTGTGCTGATATTTACGAGTGGCAGCCTAACCTTGTAAGCTATCAGATGCAAGTTTCTGGCAAACCACCTGTGAGACCAAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCAATCAAATTTGCCAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCCTTTGAAAGGAATTGTGTTGGACAAAACTGGTGCACAGTAACGGTGTCACCTGAAAATTTTGGAGGAGATCCATGCCCAAATGTCATGAAGAAACTCTCAGTAGAAGCCATTTGTACCTGA 2514 0.428 MCFKLKMWNVVLLLVCSLIASAEASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLFVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKYQMQKFTTKIVDLMKAERLYETQGGPIIMSQIENEYGPIEYEIGAAGKAYTNWAADMAMALGTGVPWIMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFLQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKIGNYQEAHVFKSKLGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKHTIYNTARVGSQSAQMKMTGVPIHGGLSWLSFNEETTTTDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDPNEGFLINGKEPVFTVFSAGHALHVFINGQLSGTSYGSLNFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRFWPAYKASGACDHCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQMQVSGKPPVRPKVHLSCSPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVMKKLSVEAICT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01820 837 PANTHER BETA-GALACTOSIDASE RELATED 18 740 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 FunFam Beta-galactosidase 290 418 - -
Phco10g01820 837 Pfam Beta-sandwich domain in beta galactosidase 345 416 IPR041392 -
Phco10g01820 837 Pfam Galactose binding lectin domain 759 836 IPR000922 GO:0030246
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Phco10g01820 837 CDD Gal_Rha_Lectin_BGal 754 836 - -
Phco10g01820 837 FunFam Beta-galactosidase 21 341 - -
Phco10g01820 837 FunFam Beta-galactosidase 589 730 - -
Phco10g01820 837 ProSiteProfiles SUEL-type lectin domain profile. 751 837 IPR000922 GO:0030246
Phco10g01820 837 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Phco10g01820 837 FunFam Beta-galactosidase 444 581 - -
Phco10g01820 837 Gene3D - 591 730 - -
Phco10g01820 837 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Phco10g01820 837 Gene3D Glycosidases 22 342 - -
Phco10g01820 837 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Phco10g01820 837 SUPERFAMILY Galactose-binding domain-like 400 571 IPR008979 -
Phco10g01820 837 SUPERFAMILY Galactose-binding domain-like 580 743 IPR008979 -
Phco10g01820 837 Gene3D - 753 837 IPR043159 -
Phco10g01820 837 FunFam Beta-galactosidase 747 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01820 Phco-Chr10 40502865 40508394 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01820 10 40502865 40508394 Phco10g01820 10 40502865 40508394 ECH
Phco10g01820 10 40502865 40508394 Phco1g00298 1 2190708 2195909 PCT