Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00268 ATGATTTTCAAAATGTGGTTCCATTTGTTCATCCTTTTCTATGTCTTGTCTGCAACTCCAATCTCCTCATTAACGGATTCCTCAAACATACTCTCTACTAACTTTCTGGACAATGCCAAGAAGCCTGAAGTCTTTGATTGGATGGTCAAACTAAGAAGGAAGATTCATGAGAACCCAGAATTGCTTTATGAGGAATTTGAGACCAGTAAACTGATCAGAGAGGAATTGGATAAACTGGGTATCCCATATAAACACCCAGTTGCTGTCACTGGTGTAATTGGTTTCATTGGAACAGGAAGCTCACCTTTTGTTGCATTAAGAGCTGACATGGATGCACTTCCCATCCAGGAAAAGGTGGAGTGGGAGCACAAGAGTAAAGTACCAGGAAAGATGCATGCTTGCGGTCATGATGCTCATGTCAGCATTCTTCTTGGGGCAGCAAAGATTCTCAAACAGCATGAAAAAGAGATACAGGGAACTGTAGTTCTTGTTTTCCAACCAGCGGAGGAGGGAGGTGCTGGGGCAAAGAAAATTTTAGAGGCTGGAGTCTTGGAAAATGTTACTGCTATCTTTGGACTACATGTGATACCCAGCATTTCAGTAGGGGAAGTGGTCTCAAGGTCTGGTCCAATGCTGGCCGGAAGTGGTGTCTTTGAAGCAATTATTAGTGGAAAGGGAGGTCATGCAGCTATTCCCCAACATTCTAGAGACCCTGTATTGGCAGCTTCTAATGTGATTATCAGCTTACAGCACCTTGTTTCTCGCGAGGCTGATCCTCTGGAACCCCAGGTGTTGACAGTTACAATGTTCCAAGGAGGTGGTGCATTCAATGTTATTCCAGATAAAGTCACAATTGGTGGCACTTTTCGAGCTTTTTCTAGAGAAAGATTGGAGCAACTTGTACAGCGCATTGAGCAGGTTGCCATTGGTCAAGCTGCTGTGCAAAGGTGTAACGCAACTGTGAGGTTCGGTGATGAAACGAGAGGTTTCTACCCTCCAGTTGTAAATAAAGGTGACTTGCACAAGCTTTTTGTTGATGTTGCTGGGAATCTGCTTGGCATCAATAAAGTTAATTCTGATGCCAGACCAATCATGGCCTCTGAAGACTTTGCTTTTTATCAAGAGGTCATACCTGGCTACTTCATCGGGCTTGGAGTGAAGAGTGCATCACCTGAACCGCTTCAGGAATTACACTCACCCTATCTCACAATCAATGAAGATGCACTTCCTTATGGGGCTGCACTTCAGGCATCACTAGCTACTACTTATCTTATAAATATGAGCAGAATGTAG 1293 0.4385 MIFKMWFHLFILFYVLSATPISSLTDSSNILSTNFLDNAKKPEVFDWMVKLRRKIHENPELLYEEFETSKLIREELDKLGIPYKHPVAVTGVIGFIGTGSSPFVALRADMDALPIQEKVEWEHKSKVPGKMHACGHDAHVSILLGAAKILKQHEKEIQGTVVLVFQPAEEGGAGAKKILEAGVLENVTAIFGLHVIPSISVGEVVSRSGPMLAGSGVFEAIISGKGGHAAIPQHSRDPVLAASNVIISLQHLVSREADPLEPQVLTVTMFQGGGAFNVIPDKVTIGGTFRAFSRERLEQLVQRIEQVAIGQAAVQRCNATVRFGDETRGFYPPVVNKGDLHKLFVDVAGNLLGINKVNSDARPIMASEDFAFYQEVIPGYFIGLGVKSASPEPLQELHSPYLTINEDALPYGAALQASLATTYLINMSRM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00268 430 FunFam N-acetyldiaminopimelate deacetylase 213 331 - -
Phco1g00268 430 Gene3D Zn peptidases 48 409 - -
Phco1g00268 430 PIRSF Amidohydrol_AmhX 33 427 IPR017439 GO:0016787
Phco1g00268 430 Gene3D - 213 331 - -
Phco1g00268 430 SUPERFAMILY Zn-dependent exopeptidases 43 425 - -
Phco1g00268 430 NCBIfam amidohydrolase 48 411 IPR017439 GO:0016787
Phco1g00268 430 Pfam Peptidase dimerisation domain 214 308 IPR011650 -
Phco1g00268 430 CDD M20_IAA_Hyd 48 424 IPR044757 GO:0009850|GO:0016787
Phco1g00268 430 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 321 IPR036264 -
Phco1g00268 430 PANTHER PEPTIDASE M20 FAMILY MEMBER 22 426 IPR017439 GO:0016787
Phco1g00268 430 Pfam Peptidase family M20/M25/M40 105 420 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00268 Phco-Chr1 1926827 1929685 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00268 1 1926827 1929685 Phco1g00268 1 1926827 1929685 ECH
Phco10g01843 10 40636425 40639914 Phco1g00268 1 1926827 1929685 PCT